Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00678 ATGTTTCTTTTTAAAAGAAGGGGCTCCCATAACAATGGAGAAACCGATGATTCTTCAGAGCAGGATGTGAAGCTTTTCCTTCTTTTGAATTATGATATTATAATTGTGATAGGAAGATTCCAACTTTTGACCTATAGTTTCGAGGGCAGATTGATAAAAGATAATGGTCTTGTCTTTAACAAACAGATCAATGAACTAAGAGCTGCCTTGGGGCACCTATCCGGTCGTAGTTTAAAGTACTGTAATGATTCATGCCTTCGGAGATATTTGGTTGCTCGGAACTGGGATCTTCATGAGGCAAAGAAAATGGTGGAGGACTCACTCAAATGGAGGGCAACTTATAAGCCCGAGGAAATCAGATGGCACGAAGTAGCACATGAAGGTGAAACGGGCAAATGTTTTAGAGCAAATTTCTATGACCGTTTTGGTCGAACAGTGCTCATATCCAGGCCAGGGATGCAGACTACTGAATTTTGTTACCTGAAGGTATTCATTAAATACCCAAGTCTAATATACTTGGCTTCCTCCTCAAATTATCAGAATACAAACTCGCCGGAAGACAATGTTCGACATGTAGTGTATCTTTTAGAGAACACCATTTTGAACCTTCGTAATGGCCAAGAACAGATATCGTGGCTGATAGATTTTACTGGATTTACACTAAACACCAACATCTCTGTCAAAGCAGCAAGAGGCATTATTAACATAATGCAGAGCCACTATCCAGAAAGGCTAGCTATTTCGTTTCTCTACAATCCTCCAAGAATCTTTCAAGCCTTTTGGAAGAAAGTAAACTTTGTATACCCCAACAACGAGGGCAGTGTAGAGCTAATGAAATCTTTCTTCGATATGGAAAATCTTCCAAGTGTATTTGGAGGAAAAGCCACTCTAACATATGACCATGAAGAGTTCTCAAAAATGATGGCAATAGACGACATGAAAACTGCCAAATTTTGGGAGTTAAACGACAAGCCTTGCCATCATATGAATGGGCAAGAGGTTGCACCAGAAGAGGCAATGCCCATCTCAGTTTCATCAGCT 1041 40.15 MFLFKRRGSHNNGETDDSSEQDVKLFLLLNYDIIIVIGRFQLLTYSFEGRLIKDNGLVFNKQINELRAALGHLSGRSLKYCNDSCLRRYLVARNWDLHEAKKMVEDSLKWRATYKPEEIRWHEVAHEGETGKCFRANFYDRFGRTVLISRPGMQTTEFCYLKVFIKYPSLIYLASSSNYQNTNSPEDNVRHVVYLLENTILNLRNGQEQISWLIDFTGFTLNTNISVKAARGIINIMQSHYPERLAISFLYNPPRIFQAFWKKVNFVYPNNEGSVELMKSFFDMENLPSVFGGKATLTYDHEEFSKMMAIDDMKTAKFWELNDKPCHHMNGQEVAPEEAMPISVSSA 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5460332 5470533 - Lsi01G006780.1 Lsi01g00678 653336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00678 347 Gene3D - 50 333 IPR036865 -
Lsi01g00678 347 SUPERFAMILY CRAL/TRIO domain 121 309 IPR036865 -
Lsi01g00678 347 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 178 338 - -
Lsi01g00678 347 SMART sec14_4 127 296 IPR001251 -
Lsi01g00678 347 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 58 157 - -
Lsi01g00678 347 PANTHER GH16843P 178 338 - -
Lsi01g00678 347 CDD SEC14 129 294 IPR001251 -
Lsi01g00678 347 Pfam CRAL/TRIO domain 131 293 IPR001251 -
Lsi01g00678 347 SMART CRAL_TRIO_N_2 82 107 IPR011074 -
Lsi01g00678 347 SUPERFAMILY CRAL/TRIO N-terminal domain 61 123 IPR036273 -
Lsi01g00678 347 PANTHER GH16843P 58 157 - -
Lsi01g00678 347 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 299 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00678 - - - cmax:111478486 487.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00678 Lsi07g00198 CCT
Lsi01g00678 Lsi07g00198 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00678 Lsi-Chr1:5460332 Lsi07g00198 Lsi-Chr7:2144750 2.33E-125 dispersed
Lsi01g00678 Lsi-Chr1:5460332 Lsi04g01657 Lsi-Chr4:24041024 1.32E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00678 Lsi_Chr01 FPKM 12.54413 14.693433 11.429568 12.619401 13.800345 10.737329 12.02177 15.739773 16.734579 17.67119