Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00680 ATGGCGAATATGTGTGCTGATAGTGGCAATCTTATGGCGATTGCTCAGCAAGTCATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCAGCAGCACCCACAACAGCCACCGCAGCAGCTCACTGGACCATGTACTTTCGGTCTCAACCCATGGAGTACCTCGAACCATGCTCTGTCTGGTGCTCCAGATTTGGGGTTTGGACTTGCCGGAGCTGGATTCCCCGACGCGTTTCAGGTTCAGAGAGTGGTCGACGGTGGGGAAACGAGCTTTCCGTTTTCGAGCTTGGAGCACCATGCTCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTGCTACTACAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGCCGGTGGAGATTCAACGAATAGCTCTAATCTTCCTTCTGGTTGCGACGCGTGGCAGTCTAATTCGGATTTTCCTTTCAACTTGGCCGATCCCTTTGTCCCCTGTCCCAGTCGCCTCACTATCCCCTGTTCTTCACCCTCTGATCTTAACAGAGTCATTTTCCCTGACCCGCCCAAAAGTGAACCCGCCGTTGAACCGCCGGTGGTCCCTTGGACGGGGATTCCCCCGGCGACTCCTTCGGCGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCACTTGCTATTTTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTGCAGAGATTGAATCGACTCCGCCTCTACTTAAAACCCTAATTGAATGTGCTCAACTTTCCGAATCCGAGCCAGATCGAGCGGTGCAAACGTTGATTAAGCTTAAGGAATCGTCATCGGAGCACGGAGATCCGACGGAGAGGGTCGCCTTTTACTTTCTCGAAGCCCTTCGCCGGAGATTATCACTCCAATCGGAGAATCGTTTAGTTTCTTACGAATCCACTTCCGACGATTTCACTCTCTCTTACAAATCTCTCAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACCGCAAATCAAGCTATCCTCGAGAGTACAGAGAACGCAAGCAAGATTCACATAATCGACTTCGGGATTGCTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCTACCGGAAGACCAACCGGAATCCGGATCTCCGGCATTCAGGCTCCGATGCTCGGGAACTGTCCGGCGACAGGGCTGTTCGCGACAGGTAACCGATTGGCCGAGTTCGCAAAGCTTTTGGAACTAAACTTTGAATTTGATCCAATTCTCACTCCAATCGAAGAACTGAACGATTCATCCTTCCGAATCAACACCGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGTGCCGTTCTCAACGTTCTGCAACTTGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCAAGCCTAAACCGGGTCGGGTTCTTCAACCGGTTTAAGAACGCACTCAGATACTACTCAGCCGTTTTCGAATCACTGGACCCAAAGCTTCCTCGCGACTCAATCGAGAGACTGCAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCAGCGGCCTGGTCGGACCGGAATCGTCGCCAGGAGCGAAAACCGAACGAATGGAAGACAAAGAAGAGTGGAAATTGTTAATGGAAAATTGCGGATTTGAATCAGTAAATCTCAGCCATTATGCGAAAAGCCAAGCTAAAATCCTTTTATGGAAGTACGATTACAACTCTGAGTATTCATTAATGGAATCCCCAGGGTTTCTCTCATTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1830 50.55 MANMCADSGNLMAIAQQVMKQKQQQEQQQQQHPQQPPQQLTGPCTFGLNPWSTSNHALSGAPDLGFGLAGAGFPDAFQVQRVVDGGETSFPFSSLEHHAPAFRFSDFDGGATTEFDSDEWMESLMAGGDSTNSSNLPSGCDAWQSNSDFPFNLADPFVPCPSRLTIPCSSPSDLNRVIFPDPPKSEPAVEPPVVPWTGIPPATPSAVVKDTQVPNPPLAIFKSEDNGGSSSSAEIESTPPLLKTLIECAQLSESEPDRAVQTLIKLKESSSEHGDPTERVAFYFLEALRRRLSLQSENRLVSYESTSDDFTLSYKSLNDACPYSKFAHLTANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGRPTGIRISGIQAPMLGNCPATGLFATGNRLAEFAKLLELNFEFDPILTPIEELNDSSFRINTDETLAVNFMLQLYNLLDEPPRAVLNVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSIERLQLEKLVLGRQISGLVGPESSPGAKTERMEDKEEWKLLMENCGFESVNLSHYAKSQAKILLWKYDYNSEYSLMESPGFLSLAWNEVPIITVSSWR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5478459 5480288 - Lsi01G006800.1 Lsi01g00680 653338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00680 609 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 242 608 - -
Lsi01g00680 609 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 242 608 IPR005202 -
Lsi01g00680 609 MobiDBLite consensus disorder prediction 17 47 - -
Lsi01g00680 609 ProSiteProfiles GRAS family profile. 232 609 IPR005202 -
Lsi01g00680 609 Pfam GRAS domain family 242 609 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00680 Lsi07g00202 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00680 Lsi-Chr1:5478459 Lsi07g00202 Lsi-Chr7:2173708 0 dispersed
Lsi01g00680 Lsi-Chr1:5478459 Lsi05g00522 Lsi-Chr5:6546210 6.71E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24602 PF03514 GRAS 1.60E-109 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00680 - - csv:101218550 1075.85