Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00685 ATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCTCGAGCACCGGCAAATCCATCACAGAATGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGACAATTCCAGCCTCACCACCTCTTCCACCTTCGCGCTCAAGATAACCCCCTTTGTCTCGTCACCTCCGACCTACCCACCCCTCCGGTCCACCACCAGAATGATCAGGTTCTGGATCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACTTGGTCCTTGGAGCACAATCCACTCTTCTTCCGCTCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTTGAGCGTATCCTAGAGTCTACGTCCTCATCCAATTTGCCGTCGTCGTCGACGGTCGTGGTCGATAACCTTAGGGCTTATATGCAGATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCTGAGCACGCGTTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGAAGCGTTGAGGCGTTGGCCACTGCTGCCCTTGTGCAGGCTATTAGGGAGGCCCAGGAGCCCCGAACCCTTCAGGAAATCTCCATTGCAGCGAATGTACCCCAAAAAGAAATAGGGAAGTACATCAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCAACTCACATCGGAGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGGAAGACACAAGCAGAAATCTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAGGAGCTACTAGAAAATTGGGATGATTTGCTTCCGTCTAATTATACTCCTGCTGTTCCTCCAGAAAGAGCATTTCCCACAACTGTAATTGCTTCAGGCCGTTCTGCAGCTCCTAAAGTTGATGCATTTGAAGGAGCTTCTTTAGAGAAAGACAAGCCGGTAGAGACTAAGCCTATTATATCCACCGAGATCTCAGAAATGGGTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTTTCCCGTGGGATGTATAACCATATGACTAACAAGTCATCAACTTTTTGTCAACCACACCCTCCTAAAGGGAATTCTATCCCAAGTACTGTAGGGAAGAAGACTCAAAGTGATACCCAGGGAATGGATATTGTTAAGGAGCACTCCAACAGCCAACAGTAA 1329 48.23 MKCPYCSAAQGRCATSSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPVHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERILESTSSSNLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDKPVETKPIISTEISEMGHPSRVKEDSESKFVSRGMYNHMTNKSSTFCQPHPPKGNSIPSTVGKKTQSDTQGMDIVKEHSNSQQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5500389 5503245 - Lsi01G006850.1 Lsi01g00685 653343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00685 442 MobiDBLite consensus disorder prediction 400 442 - -
Lsi01g00685 442 CDD CYCLIN 134 215 IPR013763 -
Lsi01g00685 442 SUPERFAMILY Cyclin-like 230 328 IPR036915 -
Lsi01g00685 442 SMART cyclin_7 232 313 IPR013763 -
Lsi01g00685 442 SMART cyclin_7 136 217 IPR013763 -
Lsi01g00685 442 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 1 440 - -
Lsi01g00685 442 SUPERFAMILY Cyclin-like 133 223 IPR036915 -
Lsi01g00685 442 Pfam Transcription factor TFIIB repeat 134 215 IPR013150 GO:0017025
Lsi01g00685 442 Pfam Transcription factor TFIIB repeat 232 313 IPR013150 GO:0017025
Lsi01g00685 442 Gene3D - 232 328 - -
Lsi01g00685 442 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 440 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 CDD CYCLIN 234 312 IPR013763 -
Lsi01g00685 442 Gene3D - 132 223 - -
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 18 38 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 178 197 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 267 283 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 299 313 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 233 251 IPR000812 GO:0006352|GO:0070897
Lsi01g00685 442 PRINTS Transcription initiation factor IIB signature 204 219 IPR000812 GO:0006352|GO:0070897
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00685 K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB - csv:101217129 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00685 Lsi-Chr1:5500389 Lsi01g01845 Lsi-Chr1:19442701 1.22E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00685 Lsi_Chr01 FPKM 0.0 0.0 92.924995 0.0 0.0 108.793053 0.0 0.0 0.0 0.0