Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00688 ATGAGGCGTCTTTGTCCCAACATCGACCGAGACGACGGCCTCGAGACCATTCTGGAGGTCCCAATCCCCGAAGAAATGTTCACCAGTATGGGCAGCAACGTCACTCTCCGTTGGCAAAACATGTCTACTTGGATGAAAGCTCAAACCTCCGATAAATGGTCTTCTCCTATCATCGCTAATCGCTTCAACGAGTTACGATTTCTCCTCTACCTCGTTGGATCTCCTCTCATTCCTCTTCAAGTCCAATTAGGGCATTCTGTTCATCGCCCCGTCAGAGATTGCTCAATTGAGGCTTCGACGGCCAAGTACATTGTGCAACAGTATATAGCGGCGACGGGAGGGCCGGCGGCGTTGAATTCGGTGCAGAGTATGTGTGTGACGGGGCAGGTGAAGATTAAAGCGTCGGATTTTCATTTGTCGGATGAGAGCATTGAGGTGAAGAAGAGTACGGAAGAGATCGGAGGGTTTGTGCTTTGGCAGAAGAATCCGGATCTATGGTGTTTGGAGCTTGTGGTTTCTGGTTGTAAGGTTATTTGTGGTTCTAATGGCAAACTTTCTTGGCGACATTCTTCTAATAATCAACATTCCCCAATCTCTACTGGCCCTCCTAGGCCTTTACGCCGATTTCTTCAGGGTTTGGACCCAAGAGCAACGGCGAACCTATTCATAGACGCAATGTGCATCGGAGAGAAGCTAATCAACGACGAAGACTGCTTCATTCTAAAGCTTGAAACAAGCCCCGCCATTCGGGAAGCACAGAGCGGCGCTAATTACGAGATAATCCACCACACAATTTGGGGATATTTCAGCCAACGCTCCGGTCTTCTCATCCAATTCGAGGATTCTCGGCTTCTACGTATGCGAACCAAAAGCGACGAAGATGTCTTCTGGGAGACCAGCACCGAGTCGTTCATGGATACCTACCGTTACGTTGACGGTGTTAACATCGCTCACAGCGGCAAGACCAACGTCACCGTCTTCAGATACGGCGAACATTCCGCTAATCACAAGAGGGAGATGGAGGAGACTTGGAAGATCGAAGAGGTTGATTTCAATGTCTGGGGCTTGACTATGGAGAGCTTTCTTCCGCCTCCTGGCGCCGCCGTCTTGCAATTGCAAAACGCTTCTTAA 1131 49.51 MRRLCPNIDRDDGLETILEVPIPEEMFTSMGSNVTLRWQNMSTWMKAQTSDKWSSPIIANRFNELRFLLYLVGSPLIPLQVQLGHSVHRPVRDCSIEASTAKYIVQQYIAATGGPAALNSVQSMCVTGQVKIKASDFHLSDESIEVKKSTEEIGGFVLWQKNPDLWCLELVVSGCKVICGSNGKLSWRHSSNNQHSPISTGPPRPLRRFLQGLDPRATANLFIDAMCIGEKLINDEDCFILKLETSPAIREAQSGANYEIIHHTIWGYFSQRSGLLIQFEDSRLLRMRTKSDEDVFWETSTESFMDTYRYVDGVNIAHSGKTNVTVFRYGEHSANHKREMEETWKIEEVDFNVWGLTMESFLPPPGAAVLQLQNAS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5510155 5512706 - Lsi01G006880.1 Lsi01g00688 653346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00688 376 Pfam Protein of unknown function (DUF620) 124 364 IPR006873 -
Lsi01g00688 376 PANTHER LIPASE 1 363 IPR006873 -
Lsi01g00688 376 PANTHER BNAC02G43970D PROTEIN 1 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00688 - - - bhj:120074751 764.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00688 Lsi-Chr1:5510155 Lsi03g00339 Lsi-Chr3:4030636 7.67E-140 dispersed
Lsi01g00688 Lsi-Chr1:5510155 Lsi08g01511 Lsi-Chr8:23202251 4.34E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g947 . . . . . . . . . . . Cma07g00496 . Car07g00436 Sed14g1106 Cpe19g00804 . Bhi03g01281 Tan03g1967 Cmetu08g1547 . Hepe04g1498 . . Cla01g01895 Cam01g1985 Cec04g1637 Cco04g1703 Clacu01g2005 Cmu01g1876 Cre04g1557 . . . . Lsi01g00688 . . Cme08g00836 . . . . Bpe10g00114 . . . . . Cmo07g00498 . . . . . . . . . . . . . . . . . . . . . Csa06g03228 Chy02g00660 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011737 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00688 Lsi_Chr01 FPKM 1.83369 2.605396 3.699471 3.279782 8.093859 6.774106 8.641682 4.497093 5.606485 4.586665