Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00692 ATGGCACCTCGCGCTTCCTTTCCAACAATGAAGAAATCCACTGCAATTTATGGATCGCCATTTTCACCTGCCTTTCTTATCGCCATCTTCTTCCTTTTCCTCTCTTTTCCTGCAAATGCCGACGACGGATGGTGGGAAACAGACAGTCCTGTGGTGAAGAGAGCCAATGAAAGAATCTCACTCCTTAAAACGGAGTACGGTGAGATCTCCGCCGTTGATTTCAATGATGGCTCTCGATTCGGACCTTACCATCTTCAGTTCATCACATTGGAACCCAACTCCCTGTTTCTCCCTGTTCTTCTTCATGCTGACATGGTGTTCTATACCCACACTGGAAGTGGGAGATTGAATTGGTTTGATGACGATGATTTGAAGGAGGTGGATTTACGGCGGGGAGATATTTACAGGCTTCATCCAGGCTCCATTTTTTACTTGCAGAGTAGCTTAGAGACCGAACGTGAAAAGCTTCGAATTTATGCTCTGTTTTCCAGCACAGATGAGGATTCGTTAAACCCCTCCATTGGAGCATACTCCCGCGTCACCGATCTGGTTCGTGGCTTCGACAAAGAAGTTCTTCGTAAAGCTTTCATGGGGATGGATTTTGCATATGGGAAAATTTGGGATCATTTTATGAACGGTTGTGATAATGCACCTGAGGAAGTAATAGAGGAAATAATGAACGCGACGAGGCCGCCACTGATCGTTCACGCTGCGACAACTCCGAGCAAGAAGAAGGAGGCGGTGGCGTGGGAATTAGAAGCTCGGTTATTGAAAGCCTTCATAGGAGGAGCAAGTGGGATGGATTTCAACAAGAAGAAGAAGAAGAAAGGCATATACAACGTTTATGAAGTAGACCCAGATTTTGAAAATTGTAACGGATGGAGTTTGACTGTAACCAAGAAAAATTCCCAACAATTGAAAGGCTCCAACATCGGCTTCTTGGTAGTCAACCTCACAGCGGGCTCGATGATGGGTCCACATTGGAATCCAAGGGCGTGGGAGATTGGGATCGTGACGTCGGACGAGCCGGGGGTGGTTCGGGTGGGGTGTTCGAGCACGGCGAAGAGCTCTAAATGCAAGAATTGGAGTTTTGTAGTTGGGAAAGGGGATGTATTTGTAGTGCCAAGGTTCCATCCAATGGCGCAGATGTCATTCAACAATGGAACATTTGTTTTTGTGGGATTTAGCACGACGAATGGACATAACATGCCGCAGTTCTTAGCTGGAAGTAGCTCTGTGTTGCAGATTGTGGACAGGGAAGTATTGGCGTGGTCGTTTGATGTGAATGTCACAACGATTGATCGACTGTTGGGAGGTAGAGTTGAATCCATTATATTGGAATGTACCTCTTGTGCTGAAGAGGAAGTTAGGAAAATGGAAGAGGAAGCTGAGAGAGAGAGACAAGAAGAAGAAGAAAGGAAGAGAGAAGAAGAGGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGAAGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAGGACGAGGAAGAGAGGAAGAGAGAAGAAGAAGAAGAACAGAGGAAGAGGGAAGAAGAAGAGAGGGAGAGAGAGGAACAGAGGAAGAGAGAAGAGGAGGAAGAGAGGAGGAGGAGAGAAGAGGAAGAGGAGAGAGAGAGAAGAGAGGAGGAGGAAGAAGAAAGGGGAGAAAGGGAGGCAGAGAGGGAGGAGGAGGAAGCAAGGGAGAGAGAGGAAACCCATCAAAGAGAGAGAGGGAGGAGACGCAGAGAGGCGGAGAGAGAGGCGGGAGAGAGAGAGAGAAGACGGTGGGAGGAAGGAGGAAGAGAAGAAGAAGAGGCAATACTAAGAATTTTGGGACTATGGACGTAA 2382 47.73 MAPRASFPTMKKSTAIYGSPFSPAFLIAIFFLFLSFPANADDGWWETDSPVVKRANERISLLKTEYGEISAVDFNDGSRFGPYHLQFITLEPNSLFLPVLLHADMVFYTHTGSGRLNWFDDDDLKEVDLRRGDIYRLHPGSIFYLQSSLETEREKLRIYALFSSTDEDSLNPSIGAYSRVTDLVRGFDKEVLRKAFMGMDFAYGKIWDHFMNGCDNAPEEVIEEIMNATRPPLIVHAATTPSKKKEAVAWELEARLLKAFIGGASGMDFNKKKKKKGIYNVYEVDPDFENCNGWSLTVTKKNSQQLKGSNIGFLVVNLTAGSMMGPHWNPRAWEIGIVTSDEPGVVRVGCSSTAKSSKCKNWSFVVGKGDVFVVPRFHPMAQMSFNNGTFVFVGFSTTNGHNMPQFLAGSSSVLQIVDREVLAWSFDVNVTTIDRLLGGRVESIILECTSCAEEEVRKMEEEAERERQEEEERKREEEEEQRKREEEEREREEQRKREEEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREDEEERKREEEEEQRKREEEEREREEQRKREEEEERRRREEEEERERREEEEEERGEREAEREEEEAREREETHQRERGRRRREAEREAGERERRRWEEGGREEEEAILRILGLWT 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5538080 5540936 - Lsi01G006920.1 Lsi01g00692 653350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00692 793 SMART Cupin_1_3 279 434 IPR006045 -
Lsi01g00692 793 Coils Coil 449 757 - -
Lsi01g00692 793 SUPERFAMILY RmlC-like cupins 24 440 IPR011051 -
Lsi01g00692 793 MobiDBLite consensus disorder prediction 505 780 - -
Lsi01g00692 793 CDD cupin_7S_vicilin-like_C 286 443 - -
Lsi01g00692 793 PANTHER OS03G0336100 PROTEIN-RELATED 26 499 - -
Lsi01g00692 793 MobiDBLite consensus disorder prediction 462 488 - -
Lsi01g00692 793 CDD cupin_7S_vicilin-like_N 61 237 - -
Lsi01g00692 793 Gene3D Jelly Rolls 45 201 IPR014710 -
Lsi01g00692 793 Pfam Cupin 279 432 IPR006045 -
Lsi01g00692 793 Gene3D Jelly Rolls 268 451 IPR014710 -
Lsi01g00692 793 PANTHER PREPROMP73 26 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00692 - - - csv:101216660 729.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00692 Lsi-Chr1:5538080 Lsi10g01289 Lsi-Chr10:17125095 3.41E-40 dispersed
Lsi01g00692 Lsi-Chr1:5538080 Lsi02g02271 Lsi-Chr2:29302408 5.12E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00692 Lsi_Chr01 FPKM 14.778351 17.570969 13.61628 14.127199 16.481585 16.392487 15.236569 33.72673 34.035206 40.977528