Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00694 ATGCCGGCTGATGTAAAAGATTCGCCCATAGCTTCAGGGGAAGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTACCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACAGGCGAGGTCATAATCTTCCATGGAAGCTTCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCAAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAAAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAATCTCAGCCTAAGCCGGTAGATTCTCATCCTAAACCGGATTTAGACTCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCCGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTGTTCCAAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGTGCTGGGTACACCCGGTTTGAGTGGTAGCAGCAGTAGCAGTAAGAGTGCAAGCAGCAATAGCAGTGCGAGAACGAGCGGATTTGCTGGTTTATTTACTTCCTCGACAACGTCGATAGGCATTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGGCATGGCTTGTTCAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTCGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCGACAGCATTACTTCAAAAAGCAGCTCAAATGGGTGCAGCAGCATCGAATGCCTCTTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCTCTTTAGCTGCTCAGCAAGAAAACTTGCCATGGAACCACCACCACCAGAGGCAAGTCGAACCCGATGGCATCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTCGCTGCTCTCATTACATCAGTTGGGAGCGGTGTAGACGTCGGCATAACAACCCGATCATACGGCGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 49.74 MPADVKDSPIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSHPKPDLDSNPDGDSQSAAVKPNPEPSPPPPPSSPPAPSPPQSTGEVTTVLPVPSQELSENPSQCIEEVLGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSTTSIGIQPPRPPAFTDLMQGMACSDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSLAAQQENLPWNHHHQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5544880 5547963 + Lsi01G006940.1 Lsi01g00694 653352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00694 511 MobiDBLite consensus disorder prediction 264 289 - -
Lsi01g00694 511 Gene3D Classic Zinc Finger 36 103 - -
Lsi01g00694 511 Gene3D Classic Zinc Finger 110 190 - -
Lsi01g00694 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Lsi01g00694 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 510 - -
Lsi01g00694 511 MobiDBLite consensus disorder prediction 269 289 - -
Lsi01g00694 511 MobiDBLite consensus disorder prediction 191 205 - -
Lsi01g00694 511 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 510 - -
Lsi01g00694 511 MobiDBLite consensus disorder prediction 185 244 - -
Lsi01g00694 511 MobiDBLite consensus disorder prediction 218 238 - -
Lsi01g00694 511 SMART c2h2final6 132 152 IPR013087 -
Lsi01g00694 511 SMART c2h2final6 97 127 IPR013087 -
Lsi01g00694 511 SMART c2h2final6 56 78 IPR013087 -
Lsi01g00694 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Lsi01g00694 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lsi01g00694 511 MobiDBLite consensus disorder prediction 1 39 - -
Lsi01g00694 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00694 Lsi-Chr1:5544880 Lsi03g02034 Lsi-Chr3:31704220 7.54E-114 dispersed
Lsi09g00719 Lsi-Chr9:8267896 Lsi01g00694 Lsi-Chr1:5544880 7.81E-74 dispersed
Lsi11g00037 Lsi-Chr11:399348 Lsi01g00694 Lsi-Chr1:5544880 4.09E-105 dispersed
Lsi02g02256 Lsi-Chr2:29097778 Lsi01g00694 Lsi-Chr1:5544880 5.65E-110 transposed
Lsi07g00216 Lsi-Chr7:2309547 Lsi01g00694 Lsi-Chr1:5544880 5.36E-163 transposed
Lsi01g00694 Lsi-Chr1:5544880 Lsi08g01410 Lsi-Chr8:22345397 2.68E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24603 PF00096 zf-C2H2 0.0052 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00694 K25869 - csv:101217597 696.041