Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00696 ATGGCGGACCATTCCGATGAACAACACTCCTTCATGACATTTGCCACTGCTTTCATTCCGTTCATTGGAGATGATGATTCTGATGATTTGGGTTCTGAGTTCGTCTTTAACATCGAACCCACTTTGCTCATTGACCCTAATTGCTTGAAGATCGGTGAAGTTATTGGGGAAGGTTCATGCTCCATTGTTTATGAAGGACTGTACGATTATCAGCCTGTTGCCGTGAAGATTATACAGCCAATTAGAACACCAGCTATAAGTCCTAAAAATGGGGGGAGAGATTTCAGAGGGAGTTTACTATCAAGAGTGAATCATGAAAACCTTATTCAGTTCGGTTGCGCTTCCATAGAGCCAACATTGATGATAATCACTGTGCTTATGAGAGGTGGACTCCAAAAGTACTTGTGGAGCATCTGGCCAGAGACCCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTGATGGCATACTTGCATTCAAATGGCATCATGCATCACGACTTAAAGCCAAGTACCGTGCTGTTTCTTATCTTCATTACTGTATCACCAACCTGTTCATAGTCCCCTGGAAGGATCTTTTCGCACGTGTCAATTGGCGAAACCCTAACCCGAAGCCGTCGATTAAACTTAACCCAGGTTATCCTATAACAACACCGTCACACCCGATCCCCATCACTCCGTTTTACCACGCGCAGCCTTCTTCGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCTCACCCGCCGCCGCCGCCGCCCGACAACCGGCACACTCGCCCTCACACACAGAGTTGCTAGTCAACAACCTACATACAGACACGCCTTCCACCTGGACTTCCACATCATTCATCTCAAAGCTTCTTGCGCCATGAAAGCAGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCGACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTACTGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGAGCCTCGAAAAAATCCAAGGGCATGTCGGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCGTCAGAAGGCAGTGATGAGAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGTGGACCAAATGGAAAATCTTCAGTGACTGGAAAACCCATCACCTCCGTTCCTGGGACTAATCTGAACATGGGAATGGACTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGAAATGCCGTCTCTTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGTGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAACTGCAGGCGAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAGAGGCTCTCCGAGGAATGTGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGGCCAGAGGCATTAGCTAACTTTGAAAAAGGAACCGCCGCGCCACCACCTCAATCTCGAGGCGGTGAGGGTAAGGATTAA 2073 48.14 MADHSDEQHSFMTFATAFIPFIGDDDSDDLGSEFVFNIEPTLLIDPNCLKIGEVIGEGSCSIVYEGLYDYQPVAVKIIQPIRTPAISPKNGGRDFRGSLLSRVNHENLIQFGCASIEPTLMIITVLMRGGLQKYLWSIWPETPRFEAFLKSCSRSITSDGILAFKWHHASRLKAKYRAVSYLHYCITNLFIVPWKDLFARVNWRNPNPKPSIKLNPGYPITTPSHPIPITPFYHAQPSSLAEAVPLVAPPSSSAVLCISTLTRRRRRPTTGTLALTHRVASQQPTYRHAFHLDFHIIHLKASCAMKAVFYIRIELDSWDAKLSPPSCGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPITAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSVPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTAAPPPQSRGGEGKD 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5555083 5565627 - Lsi01G006960.1 Lsi01g00696 653354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00696 690 Gene3D Phosphorylase Kinase; domain 1 36 127 - -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 329 350 - -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 322 350 - -
Lsi01g00696 690 PANTHER G-BOX-BINDING FACTOR 3-RELATED 328 687 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lsi01g00696 690 MobiDBLite consensus disorder prediction 513 544 - -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 588 616 - -
Lsi01g00696 690 Pfam G-box binding protein MFMR 329 418 IPR012900 -
Lsi01g00696 690 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 598 613 IPR004827 GO:0003700|GO:0006355
Lsi01g00696 690 Gene3D - 594 651 - -
Lsi01g00696 690 SUPERFAMILY Protein kinase-like (PK-like) 38 137 IPR011009 -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 429 495 - -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 447 495 - -
Lsi01g00696 690 Coils Coil 604 659 - -
Lsi01g00696 690 MobiDBLite consensus disorder prediction 671 690 - -
Lsi01g00696 690 PANTHER G-BOX-BINDING FACTOR 1 328 687 - -
Lsi01g00696 690 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 593 656 IPR004827 GO:0003700|GO:0006355
Lsi01g00696 690 SUPERFAMILY Leucine zipper domain 594 650 IPR046347 GO:0003700|GO:0006355
Lsi01g00696 690 SMART brlzneu 591 655 IPR004827 GO:0003700|GO:0006355
Lsi01g00696 690 CDD bZIP_plant_GBF1 596 646 IPR045314 GO:0003700|GO:0006355
Lsi01g00696 690 Pfam bZIP transcription factor 591 653 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00696 K09060 GBF; plant G-box-binding factor - csv:101217128 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00696 Lsi-Chr1:5555083 Lsi05g02094 Lsi-Chr5:27788450 8.55E-51 dispersed
Lsi01g00696 Lsi-Chr1:5555083 Lsi04g00324 Lsi-Chr4:3309103 3.22E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g930 . . Bda04g00063 Bda10g00121 . . . . . . . . Car03g00698 Car07g00439 Sed14g1098 Cpe19g00799 Cpe10g00596 Bhi03g01272 Tan03g1960 Cmetu08g0851 . Hepe04g1491 . . Cla01g01889 Cam01g1979 Cec04g1631 Cco04g1697 Clacu01g1999 Cmu01g1870 Cre04g1551 . . Cone6ag1607 Cone9ag1533 Lsi01g00696 . . Cme08g00828 Blo05g00785 Blo06g00126 . . Bpe10g00107 Bpe06g00053 . . . Cmo03g00796 . . . . . . . . . . . . . . . . . . . . . . Csa06g03222 Chy02g00666 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007671 2 3 2 0 2 0 2 1 1 1 1 0 0 1 1 1 1 2 2 0 1 1 1 1 1 1 1 3 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24604 PF07777 MFMR 1.60E-31 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00696 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0