Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00699 ATGGCCGCCGTGAATCTCCGACCCGACGGCGACAATTCACTACTCATTTCCCATCTCTACAACCCTGAAATCTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGAAATAAGCCACCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGAGCCGGGGCAGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGTTGAATTTTGGGAATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTAGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTGGAAGAGGAATATTCCACTCTGAAAAAAGCTCATGATTCTGTTCTTCTTCAAAAATCCCATCTTGAATCTGAGATGGTGAGACTGAAAGAGCAATTGACAGAAGCAAAAAATGAAATAAAAAAATTGGTAGAAGGAAGCGAGAGAATTTCAAGCAATAATAGTCCGAGTTCTTCGGTAACTATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTAGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGATTGGCTTAATCTTAATTATATGTAG 663 44.8 MAAVNLRPDGDNSLLISHLYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQKSHLESEMVRLKEQLTEAKNEIKKLVEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5567910 5570219 - Lsi01G006990.1 Lsi01g00699 653357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00699 220 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Lsi01g00699 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 217 IPR045224 GO:0003700
Lsi01g00699 220 Gene3D - 58 126 - -
Lsi01g00699 220 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Lsi01g00699 220 Coils Coil 109 164 - -
Lsi01g00699 220 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Lsi01g00699 220 SMART HOX_1 60 121 IPR001356 GO:0003677
Lsi01g00699 220 MobiDBLite consensus disorder prediction 27 64 - -
Lsi01g00699 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 11 217 - -
Lsi01g00699 220 CDD homeodomain 64 118 IPR001356 GO:0003677
Lsi01g00699 220 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Lsi01g00699 220 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Lsi01g00699 220 Pfam Homeodomain 63 116 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00699 Lsi-Chr1:5567910 Lsi05g00818 Lsi-Chr5:12772727 9.74E-26 dispersed
Lsi01g00699 Lsi-Chr1:5567910 Lsi03g01953 Lsi-Chr3:30940390 6.85E-27 transposed
Lsi01g00699 Lsi-Chr1:5567910 Lsi02g01555 Lsi-Chr2:21409572 1.20E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24605 PF00046 Homeodomain 2.10E-16 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00699 K09338 - csv:101216890 344.739