Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00700 ATGGGGAAGGGAGGGGGTTGTGTTCCGAGCAAGAAGAAGGTGCCTTCGTCTATTGCCGCCGCAGACGCCGACGCCACCGATGATGCAAGGCCTCGCGACACCGAAATCACTGCTCCGATCTCTGTTGAAGAAGATCAACCACAGATTGGTTCATCGGGTAATGCCACTTCCGAAGTCTCTGTCTCGGTGTCGCATCCAGTTGAGAATTTGAAGATATTCATAGTGTTTTATTCCATGTATGGTCATGTCGAAAGCTTGGCGAAGAGGATGAAGGAGGGGGTTGATGGGGTTGATGGGTTTGAGGGGATTTTGTATCGGGTACCGGAGACCTTGCCGGCGGAGGTTCTGGACCAGATGAAAGCGCCGCCCAAGGACCCGTCCATCCCCGAGATTTCAGCCGCTGAATTAGTGGCTGCTGATGGTATTTTGTTTGGCTTTCCCACCAGGTTTGGGTGTATGGCAGCGCAAATGAAAGCGTTCTTTGATTCGACGGGGCAGCTCTGGAAGGAGCAGAAGCTTGCAGGGAAGCCTGCTGGGTTCTTTGTTAGCACAGGAACTCAAGGGGGCGGCCAAGAAACAACTGCATGGACTGCAATTACCCAGTTAGCACACCATGGAATGCTGTTTGTTCCCATCGGCTACACTTTTGGTGCTGGTATGTTCAAGATAGACACAATACGAGGGGGGTCTCCTTATGGTGCAGGAGCTTTTGCTGGTGATGGCTCGAGACAGCCAAGCGAAACAGAGTTAGCGCTTGCAGAGCATCAGGGCAAATACATGGCTGCTACGGTCAAGAAGCTTTTCCAGGCTTGA 813 52.4 MGKGGGCVPSKKKVPSSIAAADADATDDARPRDTEITAPISVEEDQPQIGSSGNATSEVSVSVSHPVENLKIFIVFYSMYGHVESLAKRMKEGVDGVDGFEGILYRVPETLPAEVLDQMKAPPKDPSIPEISAAELVAADGILFGFPTRFGCMAAQMKAFFDSTGQLWKEQKLAGKPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLFVPIGYTFGAGMFKIDTIRGGSPYGAGAFAGDGSRQPSETELALAEHQGKYMAATVKKLFQA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5588466 5592284 + Lsi01G007000.1 Lsi01g00700 653358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00700 270 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 71 267 IPR010089 GO:0003955|GO:0010181
Lsi01g00700 270 MobiDBLite consensus disorder prediction 1 57 - -
Lsi01g00700 270 MobiDBLite consensus disorder prediction 25 39 - -
Lsi01g00700 270 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 26 269 - -
Lsi01g00700 270 Gene3D - 69 268 IPR029039 -
Lsi01g00700 270 Pfam NADPH-dependent FMN reductase 85 212 IPR005025 GO:0016491
Lsi01g00700 270 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 26 269 - -
Lsi01g00700 270 SUPERFAMILY Flavoproteins 71 267 IPR029039 -
Lsi01g00700 270 ProSiteProfiles Flavodoxin-like domain profile. 72 260 IPR008254 GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00700 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101216659 489.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00700 Lsi-Chr1:5588466 Lsi10g00335 Lsi-Chr10:5308577 8.34E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g926 . . Bda04g00065 . . . Bma09g00061 . . . Cma03g00770 . Car03g00700 . Sed10g0902 . Cpe10g00593 Bhi03g01268 Tan03g1957 Cmetu08g1080 . Hepe04g1488 . . Cla01g01885 Cam01g1977 Cec04g1628 Cco04g1693 Clacu01g1997 Cmu01g1867 Cre04g1549 . . . . Lsi01g00700 . . Cme08g00825 Blo05g00784 . . . . Bpe06g00055 . . . Cmo03g00799 . . . . . . . . . . . . . . . . . . . . . . Csa06g03217 Chy02g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011297 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00700 Lsi_Chr01 FPKM 38.530735 41.521744 39.815407 40.002934 36.841587 47.154591 34.334988 68.566284 69.583847 63.886604