Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00702 ATGGCTTTGGTTTCAGGTTTACATAACACAGTTTTGTATTGTAATCTCCAACTCACCAAAGATGGGATAGGCATTTGCTTAACTGATCTCAGGCTTCAAAATTCAACCAATATTGAAAATATCTTCCCTGGGGAACAAAAGTCTTATATTGTTAATGGAAAGATTTTCAAAGGATGGTTTTCTGTTGATTACATGTCTAAGGATCTCTTCGACAAACTCTTGATGATTCAAAGTGTTCTCTCTCGACCTAGTCTCTACGACAATACTATGCCAATTGCGGCTGTTGAAGATGTCATGGGGATTAAACCGAGTCAGTTTTGGTTGAACGCCGAGCACGAAGCGTTCTACGCAGAGCACAATCTGAGCGTAACATCGTACCTTCAAAAGGCATTGAGACTGATGCGAATAACCTTTGTGTCATCTTCAGAGATTGGAATATTGAAAGGGATAAGTGGGAGTGTGAACAAAGCTAGAACAAAGCTGATCTTCAGATTCTTAGAAGCCAATGAAATAGAGCCAACAACAAAGAAAACATATGGTGCTTTGGCTCAAGAACTTCTTATGATTAAGACATTTGCCTCAGGAATTCTCGTCAGAAAAGAATACGTTTGGCCAATTGGTCAAGACAAGTATGTGCAACCTGCAACAAGTCTTGTCATGGATGCTCATAAGCTTGGCTTGGAAGTTTATGCTTCTGGCTTTGCAAATGATGCTATTGTTGGTTACAATTATAGCTATGATCCAATCCGTGAATACCTTCAGTATTTTGATAATGGCCATTTTGCTGTTGATGGGGTCCTTTCTGATTTCGCTCCTGCTGCTTCTCAAGCCATTGCCTGCTATTCGAGTTTTCGCAACAATGGCCAGCCTCAGCCTGGTAACGATCCCACTAATCATTCTCTCTACTTCTTTTTGATAACCCTTTCATTTTTAGCTTTATTGTGCTCTGGTCTTATAACGCTCCAGACCCAGGTTTCAGATTCTTGGATTCTGAATCATGGACCTGGGGTGTTAGAGGCTCGAACATTTAATAAATGGATTTTTGTAAATATAACAAGAACAGGATTAGAGCAAGCATTGGTGATAAGCAGCAATGGGGCAAGTGGGGATTTCCCAGGCTCAACTGACCTTGCTTACCAAAGAGCAATTGATGATGGGGCTGATGTTATTGATTGTTCAGTTCAATTATCAAAAGATGGTGTTCCTTTCTGTATGGATATGGCAGATCTTTTGACAGGTACCACTGTTATCACTTCTTTCTCAGCTCGAACTACAACTATCCCTGAAGTTCAACGTGATGCTGGAATCTTCTCTTTTGATCTTACTTGGGCTGAGATTTTAACTCTCAAACCTCAAATTACAAACCCTTTCATGGCTTCTTCTGGCCTTGCTCGTAATCCAGCCTTTAAAAACAAGGGCAAGTTCATGACTCTCACTGAGTTTCTGGAGTTTGCTAAAGCCAAAGCTGTTTCTGGGATTATGATCAACATCCAAAACACGGCGTATTTGGCTTCAAAGAAAGGTCTGGACATGGTGGGAACTGTCTCCACTGCCTTAACCAATGCCGCTTTTGACAAACAATCAACACAACAAGTTTTCATTAGATCAGATGATACTTCTGTATTGTCCTTTTTCAAGGCAAAGTTCCCAAGTTTCGTTAGAGTTTTAACTGTTGACTCAAAGATTGGGGATGCCCCAAAAGATGCCCTTGAAGAGATCAAACACTATGCCCAAGTTGTAGCCATTCCTCGTGGCTCTATCATTGAAATTACAAACTATTTCACTACTGGCCTCACTAAAGTAGTTGCTGAAATTAAGGCTTCCAATCTCTCTGTCTTCGTTTATGTCATGAGAAATGAATATGTCTCCTTGGCCTTTGATTACTACTCTGAAGCCTCCACGGAAATCTCTACCTTTGTCGACTACTTCCATGTTGATGGCATCATTACCGAATTCCCCAATACCGCAAAACGATATATGACATGTCCATGCCGACCGACTCAACAGAATCCGAATGGAGCTCCATATATAATCATACCGCCTGAAATTGGTCTACTCATGAAAATGGTGGCTCCTGAGGCTAAACCACCCACTGATCCTCCATTGCCGCCATTGGATGCTCAAGATGTCATTGATCCACCGCTCCCAGCGGTGGTCAAAATGTCGGCCACCACTCCTTCTGATGTTGCCGACGGGCCTGCCGCGGCCACCCCATCAGCCGCTGTATCAAATGTTGCTAACTTGTTTCTTTCTCTACTCTCAGTTGTTGTGCTTAACTTCTTCGTTTCACACTCTTCATTGTAA 2304 41.93 MALVSGLHNTVLYCNLQLTKDGIGICLTDLRLQNSTNIENIFPGEQKSYIVNGKIFKGWFSVDYMSKDLFDKLLMIQSVLSRPSLYDNTMPIAAVEDVMGIKPSQFWLNAEHEAFYAEHNLSVTSYLQKALRLMRITFVSSSEIGILKGISGSVNKARTKLIFRFLEANEIEPTTKKTYGALAQELLMIKTFASGILVRKEYVWPIGQDKYVQPATSLVMDAHKLGLEVYASGFANDAIVGYNYSYDPIREYLQYFDNGHFAVDGVLSDFAPAASQAIACYSSFRNNGQPQPGNDPTNHSLYFFLITLSFLALLCSGLITLQTQVSDSWILNHGPGVLEARTFNKWIFVNITRTGLEQALVISSNGASGDFPGSTDLAYQRAIDDGADVIDCSVQLSKDGVPFCMDMADLLTGTTVITSFSARTTTIPEVQRDAGIFSFDLTWAEILTLKPQITNPFMASSGLARNPAFKNKGKFMTLTEFLEFAKAKAVSGIMINIQNTAYLASKKGLDMVGTVSTALTNAAFDKQSTQQVFIRSDDTSVLSFFKAKFPSFVRVLTVDSKIGDAPKDALEEIKHYAQVVAIPRGSIIEITNYFTTGLTKVVAEIKASNLSVFVYVMRNEYVSLAFDYYSEASTEISTFVDYFHVDGIITEFPNTAKRYMTCPCRPTQQNPNGAPYIIIPPEIGLLMKMVAPEAKPPTDPPLPPLDAQDVIDPPLPAVVKMSATTPSDVADGPAAATPSAAVSNVANLFLSLLSVVVLNFFVSHSSL 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5604647 5608810 + Lsi01G007020.1 Lsi01g00702 653360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00702 767 CDD GDPD_SHV3_repeat_2 359 659 - -
Lsi01g00702 767 Pfam Glycerophosphoryl diester phosphodiesterase family 16 270 IPR030395 GO:0006629|GO:0008081
Lsi01g00702 767 Pfam Glycerophosphoryl diester phosphodiesterase family 365 655 IPR030395 GO:0006629|GO:0008081
Lsi01g00702 767 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 354 762 - -
Lsi01g00702 767 SUPERFAMILY PLC-like phosphodiesterases 360 660 IPR017946 GO:0006629|GO:0008081
Lsi01g00702 767 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 1 289 - -
Lsi01g00702 767 ProSiteProfiles GP-PDE domain profile. 1 278 IPR030395 GO:0006629|GO:0008081
Lsi01g00702 767 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 354 762 - -
Lsi01g00702 767 Gene3D Phosphatidylinositol (PI) phosphodiesterase 7 278 IPR017946 GO:0006629|GO:0008081
Lsi01g00702 767 Gene3D Phosphatidylinositol (PI) phosphodiesterase 358 661 IPR017946 GO:0006629|GO:0008081
Lsi01g00702 767 ProSiteProfiles GP-PDE domain profile. 359 660 IPR030395 GO:0006629|GO:0008081
Lsi01g00702 767 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 289 - -
Lsi01g00702 767 SUPERFAMILY PLC-like phosphodiesterases 11 276 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00702 Lsi-Chr1:5604647 Lsi02g01864 Lsi-Chr2:24391716 1.63E-07 dispersed
Lsi01g00702 Lsi-Chr1:5604647 Lsi02g00120 Lsi-Chr2:987684 2.79E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00702 - - csv:101216172 974.926