Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00704 GAAGCGAGAGAGAATGAGAAGAAGTTCCACGCCGGAGCTGGATTGCTGGAACTGAAGAATCGGAAGCTGCTGCGGAGGGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCTATTGCTGCTAAGATCTACACTGGCCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTAGTCGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCCTGCTTCCCGAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCGTCTATACCTGCTAATCTACCTCCTCTCAGAATATCGAACAGTGCACCTGTAACACCACCTCTTTCTTCCCCAACGTCAAGGGGTTCGAAGCGAAAGCCAGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCATGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATCGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGAACATGAAAGAAATGAACAACAAACTATGGGAAAGTTGTTACGAACGTTGCCCATTTTCTTCCTGTGGTGGTGTGGGTCAGGTGAGCAAAGAATCCAAGGGCAGGAGGGGGCCTCATTGAAAGATTGCAAGATGAGTAATATCTTAAACTATTGA 1212 48.76 EARENEKKFHAGAGLLELKNRKLLRRDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLHDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKAREHERNEQQTMGKLLRTLPIFFLWWCGSGEQRIQGQEGASLKDCKMSNILNY 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5623250 5629639 - Lsi01G007040.1 Lsi01g00704 653362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00704 403 MobiDBLite consensus disorder prediction 189 205 - -
Lsi01g00704 403 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 35 352 - -
Lsi01g00704 403 MobiDBLite consensus disorder prediction 34 58 - -
Lsi01g00704 403 MobiDBLite consensus disorder prediction 189 213 - -
Lsi01g00704 403 Pfam BES1/BZR1 plant transcription factor, N-terminal 40 163 IPR008540 -
Lsi01g00704 403 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 35 352 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi01g00704 403 MobiDBLite consensus disorder prediction 44 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00704 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101216171 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00704 Lsi-Chr1:5623250 Lsi09g01562 Lsi-Chr9:23742072 3.56E-16 dispersed
Lsi02g00836 Lsi-Chr2:7840220 Lsi01g00704 Lsi-Chr1:5623250 2.96E-37 transposed
Lsi07g00285 Lsi-Chr7:3072923 Lsi01g00704 Lsi-Chr1:5623250 7.29E-43 transposed
Lsi01g00704 Lsi-Chr1:5623250 Lsi08g01414 Lsi-Chr8:22379317 1.84E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT1G75080 58.8 1.6e-88 323.2
Lsi01g00704 . 62 352 BZR Transcription Factor Family AT1G75080 59.1 4.7e-80 295.0
Lsi08g01414 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 4.7e-88 321.6
Lsi01g00704 . 62 351 BZR Transcription Factor Family AT1G19350 59.5 3.4e-78 288.9
Lsi01g00704 . 40 347 BZR Transcription Factor Family AT3G50750 58.0 5.3e-77 284.6
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT3G50750 51.8 2.5e-63 239.2
Lsi07g00285 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 1.6e-49 193.0
Lsi02g00836 . 133 380 BZR Transcription Factor Family AT4G18890 53.4 5.6e-47 184.5
Lsi07g00285 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 4.7e-117 417.9
Lsi02g00836 . 1 380 BZR Transcription Factor Family AT1G78700 58.3 1.9e-94 342.8
Lsi01g00704 . 62 234 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Lsi08g01414 . 33 204 BZR Transcription Factor Family AT4G36780 62.7 3.9e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24606 PF05687 BES1_N 2.90E-64 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00704 Lsi_Chr01 FPKM 0.297099 0.230869 0.3915 0.0 0.244491 0.0 0.0 0.0 0.0 0.0