Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi01g00704 | GAAGCGAGAGAGAATGAGAAGAAGTTCCACGCCGGAGCTGGATTGCTGGAACTGAAGAATCGGAAGCTGCTGCGGAGGGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCTATTGCTGCTAAGATCTACACTGGCCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTAGTCGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCCTGCTTCCCGAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTCCTTCAAAATATATCGTCTATACCTGCTAATCTACCTCCTCTCAGAATATCGAACAGTGCACCTGTAACACCACCTCTTTCTTCCCCAACGTCAAGGGGTTCGAAGCGAAAGCCAGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCATGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATCGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGAACATGAAAGAAATGAACAACAAACTATGGGAAAGTTGTTACGAACGTTGCCCATTTTCTTCCTGTGGTGGTGTGGGTCAGGTGAGCAAAGAATCCAAGGGCAGGAGGGGGCCTCATTGAAAGATTGCAAGATGAGTAATATCTTAAACTATTGA | 1212 | 48.76 | EARENEKKFHAGAGLLELKNRKLLRRDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLHDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKAREHERNEQQTMGKLLRTLPIFFLWWCGSGEQRIQGQEGASLKDCKMSNILNY | 403 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 5623250 | 5629639 | - | Lsi01G007040.1 | Lsi01g00704 | 653362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi01g00704 | 403 | MobiDBLite | consensus disorder prediction | 189 | 205 | - | - | |
| Lsi01g00704 | 403 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 1 | 35 | 352 | - | - | |
| Lsi01g00704 | 403 | MobiDBLite | consensus disorder prediction | 34 | 58 | - | - | |
| Lsi01g00704 | 403 | MobiDBLite | consensus disorder prediction | 189 | 213 | - | - | |
| Lsi01g00704 | 403 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 40 | 163 | IPR008540 | - | |
| Lsi01g00704 | 403 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 35 | 352 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
| Lsi01g00704 | 403 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00704 | Lsi-Chr1:5623250 | Lsi09g01562 | Lsi-Chr9:23742072 | 3.56E-16 | dispersed | |
| Lsi02g00836 | Lsi-Chr2:7840220 | Lsi01g00704 | Lsi-Chr1:5623250 | 2.96E-37 | transposed | |
| Lsi07g00285 | Lsi-Chr7:3072923 | Lsi01g00704 | Lsi-Chr1:5623250 | 7.29E-43 | transposed | |
| Lsi01g00704 | Lsi-Chr1:5623250 | Lsi08g01414 | Lsi-Chr8:22379317 | 1.84E-94 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24606 | PF05687 | BES1_N | 2.90E-64 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi01g00704 | K14503 | - | csv:101216171 | 575.089 |