Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00707 ATGGCTACTTCATTGCCTTTACCCGAACTTATTTTCGTCTCACCGAAGCGTCTTCTATCTCCTTACAGTCCCAGATGTTCGGTCTATAGGATTCCTCTCTCTAGAACTCGTAGGTTTGGTGTTCTTCTTCGCACGAAGCTCCGGGCTGTCAGAGAAGACGGTGTGGTTGCTGAAGAGAGGGAAAATGAACTGATCAAGGAAGTTAATGGATATGGACTTGGAAGTAATGGAGCTGCTTACAATGCGAATGGTGATTACAGGTACAATGGTTGGGTTAATGGCGGAGTTACGGCTGTGGAGAGTGAGAGTGGTGGAAGCAATGGGACCTTGGTGAAGTATGTTAATGGCAATGGTGTTGCTGCGACGGTGGTGGGAGAAATTCAAGCTTCGGAGTCAGTGGAGGAGGGGAGGAAGAAGAGGGTTGAGGAGATTGGTAAAGAAGAGGCTTGGTTTAAGCAGAGTGACCAGCAACAGATCGAGGTTTCTGTGGCACCTGGTGGACGCTGGAATAGATTTAAAACATATTCAACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTAATTTTATCATCAAGGCTTGGCTTAACAATCAGAAATTTACTTATCGAGGAGGAATGACAGAGGAGAAAAAGGTCGCTAGAAGAAAGATCCTAGCTAAGTGGTTGAAAGAAAACATTTTGAGATTAGGTCCAACTTTTATTAAAATTGGTCAGCAATTTTCCACTAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTGTCAGAGCTTCAGGATCAAGTTCCTCCTTTCCCATCTGAGACAGCAATATCAATAGTTGAAGAAGAGCTTGGAGGTCCTGTGGCCAATATATTTGAACGGTTTGATCAGGAACCGATAGCTGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAAGTTGTGGTGAAAGTACAGAGGCCAAGTCTAAAGGAACTCTTTGATATTGATCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAAAAACTTGACCCAAAGTCAGATGGTGCAAAAAGAGATTGGGTTGCTATATATGATGAGTGTGCAAACGTCCTGTATCAGGAGATAGATTACACCAAGGAAGCAGCTAATGCTGAGCGGTTTTCAAGCAACTTTAGAAACTTGGACTATGTGAAAGTCCCATCAATATACTGGGACTATACTACCCCACAGGTTCTGACTATGGAATATGTTCCTGGAATTAAAATAAATAAGATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGGTTAGGTCGTTATGCTGTTGAATCTTACCTGGAGCAAATTCTGTCGCATGGATTCTTCCATGCAGATCCTCATCCTGGGAACATTGCTGTAGATGACGTCAATGGAGGAAGGTTGATCTTTTACGATTTTGGAATGATGGGAAGTATCAGTTCAAATATCAGAGAGGGTTTGCTGGAAACGTTCTATGGAGTGTATGAGAAAGATCCAGACAAGGTTCTTCAAGCAATGGTTCAAATGGGGGTTCTTGTGCCTACTGGAGATATGACGGCTGTTAGACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTCTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAACTTGGTTTTAAGAAACCATTGACAAAGGAGGAAAAGTTAATGAAAAAAAAGGAACGCCTAGCTGCAATTGGGGAAGATCTATTAGCCATTGCAGCGGATCAACCATTTCGGTTTCCTGCCACATTCACATTTGTTGTTAGAGCATTTTCAGTATTAGATGGCATTGGGAAAGGCCTTGACCCACGATTTGACATTACTGAAATTGCCAAGCCATATGCTCTGGAATTACTGAAGTTTCGGGAAGCTGGAGTTGAGGTTGCCTTGAAGGATTTCAGAAAGAGATGGGACAGGCAGTCTCGTGCGTTCTATAACTTATTTAGACAGGCCGAAAGAGTTGAAAAACTTGCTGACATTATCCAAAGACTGGAGCAAGGTGATCTCAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGAGCATTCCAACGTGTTGCAACAGTTCAGAAGACTCTAGGAAATGCAATTGCTGCTGGAAGCCTAATCAACCTTGCAACAATATTATATATCAACTCCATTCGGATGCCTGCCACTATTGCCTACATCTTTTGTGCCTTTTTTGGGTTTCAAGTGCTCTTCGGTCTTATCAAAGTCAAAAGATTAGATGAACGGGAGAGGTTGATAACAGGAACCGCTTGA 2286 43.0 MATSLPLPELIFVSPKRLLSPYSPRCSVYRIPLSRTRRFGVLLRTKLRAVREDGVVAEERENELIKEVNGYGLGSNGAAYNANGDYRYNGWVNGGVTAVESESGGSNGTLVKYVNGNGVAATVVGEIQASESVEEGRKKRVEEIGKEEAWFKQSDQQQIEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFNFIIKAWLNNQKFTYRGGMTEEKKVARRKILAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAISIVEEELGGPVANIFERFDQEPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAERFSSNFRNLDYVKVPSIYWDYTTPQVLTMEYVPGIKINKIKALDQLGIDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMVQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWDRQSRAFYNLFRQAERVEKLADIIQRLEQGDLKLRVRALESERAFQRVATVQKTLGNAIAAGSLINLATILYINSIRMPATIAYIFCAFFGFQVLFGLIKVKRLDERERLITGTA 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5651700 5659953 + Lsi01G007070.1 Lsi01g00707 653365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00707 761 Gene3D Transferase(Phosphotransferase) domain 1 293 495 - -
Lsi01g00707 761 Pfam ABC1 atypical kinase-like domain 259 507 IPR004147 -
Lsi01g00707 761 PANTHER ABC TRANSPORTER-LIKE PROTEIN 73 759 - -
Lsi01g00707 761 SUPERFAMILY Protein kinase-like (PK-like) 261 503 IPR011009 -
Lsi01g00707 761 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 73 759 - -
Lsi01g00707 761 Coils Coil 531 551 - -
Lsi01g00707 761 CDD ABC1_ADCK3-like 260 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00707 - - - csv:101215926 1405.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00707 Lsi06g00689 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00365 Lsi-Chr1:3227997 Lsi01g00707 Lsi-Chr1:5651700 3.19E-32 dispersed
Lsi01g00707 Lsi-Chr1:5651700 Lsi10g00040 Lsi-Chr10:608597 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0943 Cone1ag1702 . . Lsi01g00707 . Chy07g01304 . . . . . . . . . . . . . Cma20g00873 . Car05g00767 . . . . . . . . . Cla03g01012 Cam03g1066 Cec03g1062 Cco03g1057 Clacu03g1036 Cmu03g1626 Cre03g1328 Lsi06g00689 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00707 Lsi_Chr01 FPKM 35.615448 42.943649 23.935062 21.985519 23.731247 20.758263 22.543531 17.476803 17.072477 16.033859