Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00729 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCACCGGCGCCGATCACCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGACTTTATTGCTCCTTGCCAATGCAAAGGGACGTCAAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCACACTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCTTGAAATTTCGATTTTTTGTGACCAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTTCTGACTGTCATTTACCTGGCACTCTTTGTATTTAATATCCTACGAGTTCCCTTGACACCCAAATGTTGTAAGGTCAGACTATGTGCTGACTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTATTATTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCGAAAAGAATGCTAACAAAGGAATATGTTGTAGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 948 44.83 MAGQPSDSSPLIPPAPITDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCQCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLELYYFLHCSAYLDASSLVMIGELGVIWLNHVENCVYVVATLDYVLTVIYLALFVFNILRVPLTPKCCKVRLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5760844 5766650 + Lsi01G007290.1 Lsi01g00729 653387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00729 315 CDD RING_CH-C4HC3_MARCH 35 83 - -
Lsi01g00729 315 PANTHER BNAA04G12620D PROTEIN 6 315 - -
Lsi01g00729 315 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 315 - -
Lsi01g00729 315 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Lsi01g00729 315 SMART ringv_2 34 83 IPR011016 GO:0008270
Lsi01g00729 315 SUPERFAMILY RING/U-box 31 87 - -
Lsi01g00729 315 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Lsi01g00729 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00729 Lsi-Chr1:5760844 Lsi06g00932 Lsi-Chr6:19176905 6.09E-51 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00729 - - csv:101214008 487.648