Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00754 ATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCAGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTATATCAACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCTAGCATTGCCTTCTCCTTCTGTTTCTTCTCAGCCAAGATTCAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATTGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCCCACCAACTACGTCTTCCCTCTCTTCTTCTTCTTCATTCCAATCTCAATACCATAACTTCCTTGCCCCTAAATCCATCCCCATGAAGCACATCGGCTCTCTACCTAAGTCCACTAAACTCTATAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCCGAAATCAGACTCCCAAAGAACCGAACTAGACTCTGGCTTGGGACTTTTGACACGGCCGAGGAGGCTGCTTTGGCCTATGATAAAGCTGCTTACAAGCTCCGTGGGGACTTTGCTAGGCTCAATTTCCCACATCTCAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCGAAACTTCAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGAAGCTCTGTTCTGCCGAGGATGAAAAACCAACGACCAGTCCACTTCCATCCGAATCAAACTCAGGGGTTAACAATTTTTGGGAACCAGAATTGAAAATCGAAGTGGAAACCTCATCTTCATCATCATCCTCATCTCCTTCACGGTCTGAAAATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGAGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTAAATAATGGTGTTATGTTGTTTTTTCTTCTCTTGCATGACCATTTTGGTTATGAGTCTTTTGTTTTTTTGGTCTCTTCTTGTCTGATGGTTCTGTTCTTAATGGAAATCACGAAATTGGAAAATATGAACATTAAAAATAGTAGTGACGCCAAAGACAAAGTTGAGAGTCGCAAACAAAAAGAAAAAGTCTCGAATACTTTACTAATATAA 1236 42.64 MAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSAISTSSSSSSSSSSSPPPLALPSPSVSSQPRFSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPPPTTSSLSSSSSFQSQYHNFLAPKSIPMKHIGSLPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLQAICQGLKQGKTEKLCSAEDEKPTTSPLPSESNSGVNNFWEPELKIEVETSSSSSSSSPSRSENYSTGSSPESSISFLDFSDSQWSEGVEAFCLEKYPSVEIDWAALNNGVMLFFLLLHDHFGYESFVFLVSSCLMVLFLMEITKLENMNIKNSSDAKDKVESRKQKEKVSNTLLI 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5900067 5901861 + Lsi01G007540.1 Lsi01g00754 653412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00754 411 MobiDBLite consensus disorder prediction 284 309 - -
Lsi01g00754 411 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 MobiDBLite consensus disorder prediction 258 272 - -
Lsi01g00754 411 MobiDBLite consensus disorder prediction 249 272 - -
Lsi01g00754 411 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Lsi01g00754 411 MobiDBLite consensus disorder prediction 38 69 - -
Lsi01g00754 411 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 344 - -
Lsi01g00754 411 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 344 - -
Lsi01g00754 411 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Lsi01g00754 411 MobiDBLite consensus disorder prediction 392 411 - -
Lsi01g00754 411 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00754 Lsi-Chr1:5900067 Lsi04g02353 Lsi-Chr4:30737737 1.38E-75 dispersed
Lsi06g01139 Lsi-Chr6:21664451 Lsi01g00754 Lsi-Chr1:5900067 7.72E-16 transposed
Lsi09g01142 Lsi-Chr9:18328018 Lsi01g00754 Lsi-Chr1:5900067 6.44E-36 transposed
Lsi01g00754 Lsi-Chr1:5900067 Lsi08g00953 Lsi-Chr8:18020199 5.36E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24607 PF00847 AP2 1.00E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00754 K09286 - csv:101211347 522.316