Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00775 | ATGAATCCTCCCACTTTTCCCATGGAATTTTCCGGCGATCCACTTCCGACCACTATCATCGGAAGCGGCGACCCACGGATTCCGTTGCAAAACCTCTCCACCATCCGTTCTAGAATGGATGCCGTCCAAATCTTCCTATCCGATAACATCGACAGAGAAGTTCGTATCACCAATCAGCAGATGGATGCCGTTTCTTCTGAAATCGCCACCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCGCCGAAGCGAAAACCCCAACTGCGCCGGATTTGACGGCTTCGACGACTCGAAGTCATCCGAATCCTGTAACAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGCGTAGATGAGATTACGAGAACCGAATCTGAGGAATTTGACTCGGATTGGGAAATAGTAGAGCTGGATGCGATGGAATTGCTAGCAGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGGGACGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACTCCAGAGGCGTTGGCCAAGCCGTTGGATGTTGTTGGTGCGGACCACAGGACGAAGCGCACGCGATTCTCGTGCCCTTACGACGGCTGTGTAAGGAATAAAATGCACAAGAAATTTAGGGCACTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGTAGCCACTGCCCTAAAATGTTCTCTTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGACAAACTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTGTCCGACGACACTTCTGCACCGGCGGCGACGTCGGAGATGGATGAAGATGGAGATAGTAATCAGATTTCGAAGGATGTTAATTACCCAAACGCGTCCAATGGTTCGTCGGATGATGGATCTTTTGAATCGTTTCTTGATGGGTTTGTGTTTGTCTGTTTAGAGATCTGTACATATGAAATTCTTTGCGTAGATTTGGATTTGTCTATATTCAAACTTGATTGTTGGAAAGTACTCCGTGTCAACTCCGATGAACTTCCTATGAGAGGATACTAA | 1161 | 49.01 | MNPPTFPMEFSGDPLPTTIIGSGDPRIPLQNLSTIRSRMDAVQIFLSDNIDREVRITNQQMDAVSSEIATAIQQIIVNGAALLACAEAKTPTAPDLTASTTRSHPNPVTEKSMAELKVEGVDEITRTESEEFDSDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRTKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVSDDTSAPAATSEMDEDGDSNQISKDVNYPNASNGSSDDGSFESFLDGFVFVCLEICTYEILCVDLDLSIFKLDCWKVLRVNSDELPMRGY | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6094477 | 6095854 | + | Lsi01G007750.1 | Lsi01g00775 | 653433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00775 | 386 | SMART | c2h2final6 | 202 | 235 | IPR013087 | - | |
Lsi01g00775 | 386 | SMART | c2h2final6 | 240 | 262 | IPR013087 | - | |
Lsi01g00775 | 386 | SMART | c2h2final6 | 152 | 174 | IPR013087 | - | |
Lsi01g00775 | 386 | SMART | c2h2final6 | 268 | 292 | IPR013087 | - | |
Lsi01g00775 | 386 | Gene3D | Classic Zinc Finger | 152 | 175 | - | - | |
Lsi01g00775 | 386 | Gene3D | Classic Zinc Finger | 227 | 298 | - | - | |
Lsi01g00775 | 386 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 19 | 361 | IPR044300 | GO:0010044|GO:0010447 | |
Lsi01g00775 | 386 | SUPERFAMILY | beta-beta-alpha zinc fingers | 149 | 175 | IPR036236 | - | |
Lsi01g00775 | 386 | Pfam | Zinc-finger of C2H2 type | 153 | 172 | - | - | |
Lsi01g00775 | 386 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 152 | 179 | IPR013087 | - | |
Lsi01g00775 | 386 | MobiDBLite | consensus disorder prediction | 298 | 330 | - | - | |
Lsi01g00775 | 386 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 154 | 174 | IPR013087 | - | |
Lsi01g00775 | 386 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 19 | 361 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00775 | Lsi-Chr1:6094477 | Lsi02g01944 | Lsi-Chr2:25337855 | 1.85E-78 | dispersed | |
Lsi01g00775 | Lsi-Chr1:6094477 | Lsi08g01410 | Lsi-Chr8:22345397 | 1.17E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24610 | PF12874 | zf-met | 0.0033 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00775 | - | - | cmo:103484966 | 630.943 |