Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00775 ATGAATCCTCCCACTTTTCCCATGGAATTTTCCGGCGATCCACTTCCGACCACTATCATCGGAAGCGGCGACCCACGGATTCCGTTGCAAAACCTCTCCACCATCCGTTCTAGAATGGATGCCGTCCAAATCTTCCTATCCGATAACATCGACAGAGAAGTTCGTATCACCAATCAGCAGATGGATGCCGTTTCTTCTGAAATCGCCACCGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCGCCGAAGCGAAAACCCCAACTGCGCCGGATTTGACGGCTTCGACGACTCGAAGTCATCCGAATCCTGTAACAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGCGTAGATGAGATTACGAGAACCGAATCTGAGGAATTTGACTCGGATTGGGAAATAGTAGAGCTGGATGCGATGGAATTGCTAGCAGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGGGACGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACTCCAGAGGCGTTGGCCAAGCCGTTGGATGTTGTTGGTGCGGACCACAGGACGAAGCGCACGCGATTCTCGTGCCCTTACGACGGCTGTGTAAGGAATAAAATGCACAAGAAATTTAGGGCACTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGTAGCCACTGCCCTAAAATGTTCTCTTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGACAAACTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTGTCCGACGACACTTCTGCACCGGCGGCGACGTCGGAGATGGATGAAGATGGAGATAGTAATCAGATTTCGAAGGATGTTAATTACCCAAACGCGTCCAATGGTTCGTCGGATGATGGATCTTTTGAATCGTTTCTTGATGGGTTTGTGTTTGTCTGTTTAGAGATCTGTACATATGAAATTCTTTGCGTAGATTTGGATTTGTCTATATTCAAACTTGATTGTTGGAAAGTACTCCGTGTCAACTCCGATGAACTTCCTATGAGAGGATACTAA 1161 49.01 MNPPTFPMEFSGDPLPTTIIGSGDPRIPLQNLSTIRSRMDAVQIFLSDNIDREVRITNQQMDAVSSEIATAIQQIIVNGAALLACAEAKTPTAPDLTASTTRSHPNPVTEKSMAELKVEGVDEITRTESEEFDSDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRTKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVSDDTSAPAATSEMDEDGDSNQISKDVNYPNASNGSSDDGSFESFLDGFVFVCLEICTYEILCVDLDLSIFKLDCWKVLRVNSDELPMRGY 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6094477 6095854 + Lsi01G007750.1 Lsi01g00775 653433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00775 386 SMART c2h2final6 202 235 IPR013087 -
Lsi01g00775 386 SMART c2h2final6 240 262 IPR013087 -
Lsi01g00775 386 SMART c2h2final6 152 174 IPR013087 -
Lsi01g00775 386 SMART c2h2final6 268 292 IPR013087 -
Lsi01g00775 386 Gene3D Classic Zinc Finger 152 175 - -
Lsi01g00775 386 Gene3D Classic Zinc Finger 227 298 - -
Lsi01g00775 386 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 361 IPR044300 GO:0010044|GO:0010447
Lsi01g00775 386 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Lsi01g00775 386 Pfam Zinc-finger of C2H2 type 153 172 - -
Lsi01g00775 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Lsi01g00775 386 MobiDBLite consensus disorder prediction 298 330 - -
Lsi01g00775 386 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Lsi01g00775 386 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00775 Lsi-Chr1:6094477 Lsi02g01944 Lsi-Chr2:25337855 1.85E-78 dispersed
Lsi01g00775 Lsi-Chr1:6094477 Lsi08g01410 Lsi-Chr8:22345397 1.17E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24610 PF12874 zf-met 0.0033 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00775 - - cmo:103484966 630.943