Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00802 ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGCTACAAATAATGAGTTTGAGCGATGCTCAATTTCACTGCCCAACCGAAGAACCCGTGACCCGAATGTTGACTGTGTCGGATCCGAGACTTTTCTGGGCTCTGCTTTAGAGAGTGAAGAGAGAGTTGGAAGAATGGTTGAGAAAGAGATTGAGCATTTACCCACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGGAGAGAGGCTGTTGATTGGATTTGGAAGTGTGGTGTGATGAAACAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTGTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGTTAGTTAGCTTCTTCAATCTTCTATCTGTTTTGTTGATGGATTTCAATTTTGAACTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTTTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGAGCAGCACATACCAAGTACATCCTTCTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTTCAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTGATGAAGTGTATTGAACTGATTAGAGATTTGTCATTGATTAATAATGTGTATGAAAATTCAATGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGCCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCGTCTTCTTCTTCTCATGACAGTCCAGACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1179 39.61 MADSFYCTENANICFDDQFDCNATNNEFERCSISLPNRRTRDPNVDCVGSETFLGSALESEERVGRMVEKEIEHLPTHDYLKRMLSGDLDLKFRREAVDWIWKCGVMKQAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQLVSFFNLLSVLLMDFNFELQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSTSFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGEFQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNVYENSMAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSSSHDSPDSKRRRQDRPSSNDDSSPSSPVK 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6327312 6333259 - Lsi01G008020.1 Lsi01g00802 653460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00802 392 CDD CYCLIN 94 212 IPR013763 -
Lsi01g00802 392 Gene3D - 66 307 - -
Lsi01g00802 392 PANTHER CYCLIN-D4-1-LIKE 48 170 - -
Lsi01g00802 392 MobiDBLite consensus disorder prediction 367 381 - -
Lsi01g00802 392 Pfam Cyclin, N-terminal domain 67 219 IPR006671 -
Lsi01g00802 392 MobiDBLite consensus disorder prediction 354 392 - -
Lsi01g00802 392 SMART Cyclin_C_2 222 333 IPR004367 -
Lsi01g00802 392 SMART cyclin_7 105 213 IPR013763 -
Lsi01g00802 392 PANTHER CYCLINS 48 170 IPR039361 -
Lsi01g00802 392 Gene3D - 77 220 - -
Lsi01g00802 392 PANTHER CYCLIN-D4-1-LIKE 189 378 - -
Lsi01g00802 392 Pfam Cyclin, C-terminal domain 222 315 IPR004367 -
Lsi01g00802 392 PANTHER CYCLINS 189 378 IPR039361 -
Lsi01g00802 392 SUPERFAMILY Cyclin-like 60 219 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00802 Lsi-Chr1:6327312 Lsi08g01495 Lsi-Chr8:23110265 5.00E-50 dispersed
Lsi03g01011 Lsi-Chr3:19453538 Lsi01g00802 Lsi-Chr1:6327312 2.30E-58 transposed
Lsi01g00802 Lsi-Chr1:6327312 Lsi08g01007 Lsi-Chr8:18603898 4.19E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00802 K18810 - csv:101209378 563.533