Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00816 ATGAACGGCGAAGCAGAGAAGGTCTTCGTTGCTATTGGGAACGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTGAAGAAATGGAAGTCTCACCCAATTTCAATAGTGATTCTTCACGTTGCCTACAATAATTCCATGGAATATGTTCACACTCCATTCGGGAAACTGCCTGCGAGTTCTGTGAGTGAGGAGAAAGTGGAAGTTCTAAGGAGATATGAGAAGGAAAAGATCGACAAGCTACTTTCTAAATATGTGGATTTTTGTGGCAAGGTAAGAACCGAAATTCTCAAGGTTGAGAAATCTGATGAACCCGTTCATAAGCTCATTGTTGACTTGATTTCAGAACTGGGAATAACCAATCTGGTCATTGGCTTCACATTCATGAAATCTTCATCTTGGAAGCCAAAGAATGCTATTAGTGGATCATTTTACATTTATAGGAACAAGGCCCATTTTTGCGAGTTATTTGTAATATGGGGAGGAAAACAGGTATTTCTAAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCAGTAAGAACTCGTTAAAGGGCTGGCTGGGAAAGATGTTCATGGAAGACCCAAACTATTCCTCAGACAGGAATTTGAGTCTCTCGTCTTCTTCACCAATTAGTACAAATTCCTTGGGTTCTAGAAATTATTGGGGCTATAATGTCCATGAACTAGAGAACTACTATGAGGAATTACTTTCATTGAATTTGCAGGAAGAAGAAGACTGTGAGCAGGATCAAGATGGTGTCCTTGAAAGTTCAAGTTCAACCCAGTTCAATATTCTGGATCATCCGGATTCAAATATGAATGCTGAGGAAAGAATTGAGCATCTGAGAACTAAAATTGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGTTGAAAGGCAAGCTAAAGCAGAGTGGGCTATTAATTTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCTAAGATAAAAGAAGAGGTTGCAATTAGGGAAGAGTTGCAAACAGAATTAGATTCTGCCAAAGACTACATCCTTGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAAATTAAGTTCACTTCTGGAACTCCAAGCTGAATTATCGAGCAAGCTACAGTTTTCCACAGCAGGAAAATCGCGTTTAGAGGCTCAATTGGAGAAGACAGCAAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGGAGCTGAGAAGACAAAGAGAGATTCTTCACCGGAGAATTGAGTTCTGTAAAGACAAAGATGCCATTGGAATGGCCGAAAGGTCAACTGAAGTGTCTTGTAGTACAAGAGTGTACACGGTGGAAGAGATCAGATTGGCCACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAGTGTATAGAGGACGTATCAACCATATCTCAGTTGCAATCCAGATGATTGACTCAGGAAATCGTCTGTCAGAAGACGAATTCCAATCTAAGGTGGAGCTTTTAAGTCATATCCGCCACCCTCATCTGATTGCCATGATGGGATTCTGCCCCGAGCTCAAATGCATTGTCTTTGAATATATGCATAGCGGCAGCTTAAGTGACAGACTACTCCCTTCCAATTCCCACAAAAGATCCAAGAAAATATGTCGCCCTCTCATGTGGCATGAAAGAATCCGTATAGCTTCAGAAGTATGCTCGGGCCTGAGCTTCCTTCACCAAGTCCAACCTCAGCCCATTTCTCATGGCAAACTCACCCTGTCCAAAATTCTCCTGGACCAAAACCTTGCTGCCAAAGTCACTGGTTTTGGGCTCGATGAATCGAATGAAGCTAGTGGTACTGAGTTGGATATCCGAGCTTTTGGGGCTCTGTTGCTACATATTGTAACCGGGAGGACTTGGGAAGGGCTGACTGAGAAGGCATTGTCAATGGGTAAGGTGGGTCTGATCCAGATTCTAGATGATAAAGCTGGACAATGGCCATTGAGCTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGTTCCACTTTAGATGTTAACTTGGGGACCGCCATGGAAGAGATCGATGAGATCAAGAGGAAAGCAGATGATCTGGTGGTGGGAAATGGAAAGGATGTGGAAGGTATTGAAGGTACAGATGCAGCTAATGAGGACGTAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCTTACGAGCTAGAGGCCATAGGACAATGGATAAGAGCAGGACACGATACATCACCAATGACCAACTTGAAGCTGCAGCATCCTTATCTCACCCCTAATCATACTCTTCGCTCTCTAATTCAAGACTGGCAAAATGAGACCTCAAATGTTTAA 2421 43.0 MNGEAEKVFVAIGNDLHDGFKTLGWTLKKWKSHPISIVILHVAYNNSMEYVHTPFGKLPASSVSEEKVEVLRRYEKEKIDKLLSKYVDFCGKVRTEILKVEKSDEPVHKLIVDLISELGITNLVIGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRISKISSKNSLKGWLGKMFMEDPNYSSDRNLSLSSSSPISTNSLGSRNYWGYNVHELENYYEELLSLNLQEEEDCEQDQDGVLESSSSTQFNILDHPDSNMNAEERIEHLRTKIEEARKTIQLMKDEAKGSVERQAKAEWAINLCSQRTEELEAKIKEEVAIREELQTELDSAKDYILEIVGDIEESKIKLSSLLELQAELSSKLQFSTAGKSRLEAQLEKTAKTREGMVREIEELRRQREILHRRIEFCKDKDAIGMAERSTEVSCSTRVYTVEEIRLATDSFSEQMRLSSRVYRGRINHISVAIQMIDSGNRLSEDEFQSKVELLSHIRHPHLIAMMGFCPELKCIVFEYMHSGSLSDRLLPSNSHKRSKKICRPLMWHERIRIASEVCSGLSFLHQVQPQPISHGKLTLSKILLDQNLAAKVTGFGLDESNEASGTELDIRAFGALLLHIVTGRTWEGLTEKALSMGKVGLIQILDDKAGQWPLSLVDGLVDLALRCVTPNGSTLDVNLGTAMEEIDEIKRKADDLVVGNGKDVEGIEGTDAANEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIGQWIRAGHDTSPMTNLKLQHPYLTPNHTLRSLIQDWQNETSNV 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6457124 6461409 - Lsi01G008160.1 Lsi01g00816 653474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00816 806 CDD RING-Ubox_WDSUB1_like 737 778 - -
Lsi01g00816 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 4 802 - -
Lsi01g00816 806 Coils Coil 280 314 - -
Lsi01g00816 806 Gene3D Phosphorylase Kinase; domain 1 436 532 - -
Lsi01g00816 806 SUPERFAMILY RING/U-box 722 804 - -
Lsi01g00816 806 SMART Ubox_2 736 799 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 Coils Coil 392 433 - -
Lsi01g00816 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 731 806 IPR013083 -
Lsi01g00816 806 ProSiteProfiles Protein kinase domain profile. 453 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00816 806 Pfam Protein tyrosine and serine/threonine kinase 474 614 IPR001245 GO:0004672|GO:0006468
Lsi01g00816 806 ProSiteProfiles U-box domain profile. 732 806 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 PANTHER OS02G0152300 PROTEIN 4 802 - -
Lsi01g00816 806 Coils Coil 329 349 - -
Lsi01g00816 806 SUPERFAMILY Protein kinase-like (PK-like) 451 684 IPR011009 -
Lsi01g00816 806 Pfam U-box domain 733 804 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 Gene3D Transferase(Phosphotransferase) domain 1 545 687 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00816 - - - csv:101208158 1350.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00816 Lsi-Chr1:6457124 Lsi09g01569 Lsi-Chr9:23802565 7.18E-81 dispersed
Lsi01g00816 Lsi-Chr1:6457124 Lsi05g02044 Lsi-Chr5:27399888 4.86E-83 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011736 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83264 PF07714 PK_Tyr_Ser-Thr 4.20E-18 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00816 Lsi_Chr01 FPKM 2.583868 2.328275 0.0 0.0 1.659606 1.308194 1.555883 0.500784 0.0 0.258761