Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00816 ATGAACGGCGAAGCAGAGAAGGTCTTCGTTGCTATTGGGAACGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTGAAGAAATGGAAGTCTCACCCAATTTCAATAGTGATTCTTCACGTTGCCTACAATAATTCCATGGAATATGTTCACACTCCATTCGGGAAACTGCCTGCGAGTTCTGTGAGTGAGGAGAAAGTGGAAGTTCTAAGGAGATATGAGAAGGAAAAGATCGACAAGCTACTTTCTAAATATGTGGATTTTTGTGGCAAGGTAAGAACCGAAATTCTCAAGGTTGAGAAATCTGATGAACCCGTTCATAAGCTCATTGTTGACTTGATTTCAGAACTGGGAATAACCAATCTGGTCATTGGCTTCACATTCATGAAATCTTCATCTTGGAAGCCAAAGAATGCTATTAGTGGATCATTTTACATTTATAGGAACAAGGCCCATTTTTGCGAGTTATTTGTAATATGGGGAGGAAAACAGGTATTTCTAAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCAGTAAGAACTCGTTAAAGGGCTGGCTGGGAAAGATGTTCATGGAAGACCCAAACTATTCCTCAGACAGGAATTTGAGTCTCTCGTCTTCTTCACCAATTAGTACAAATTCCTTGGGTTCTAGAAATTATTGGGGCTATAATGTCCATGAACTAGAGAACTACTATGAGGAATTACTTTCATTGAATTTGCAGGAAGAAGAAGACTGTGAGCAGGATCAAGATGGTGTCCTTGAAAGTTCAAGTTCAACCCAGTTCAATATTCTGGATCATCCGGATTCAAATATGAATGCTGAGGAAAGAATTGAGCATCTGAGAACTAAAATTGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGTTGAAAGGCAAGCTAAAGCAGAGTGGGCTATTAATTTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCTAAGATAAAAGAAGAGGTTGCAATTAGGGAAGAGTTGCAAACAGAATTAGATTCTGCCAAAGACTACATCCTTGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAAATTAAGTTCACTTCTGGAACTCCAAGCTGAATTATCGAGCAAGCTACAGTTTTCCACAGCAGGAAAATCGCGTTTAGAGGCTCAATTGGAGAAGACAGCAAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGGAGCTGAGAAGACAAAGAGAGATTCTTCACCGGAGAATTGAGTTCTGTAAAGACAAAGATGCCATTGGAATGGCCGAAAGGTCAACTGAAGTGTCTTGTAGTACAAGAGTGTACACGGTGGAAGAGATCAGATTGGCCACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAGTGTATAGAGGACGTATCAACCATATCTCAGTTGCAATCCAGATGATTGACTCAGGAAATCGTCTGTCAGAAGACGAATTCCAATCTAAGGTGGAGCTTTTAAGTCATATCCGCCACCCTCATCTGATTGCCATGATGGGATTCTGCCCCGAGCTCAAATGCATTGTCTTTGAATATATGCATAGCGGCAGCTTAAGTGACAGACTACTCCCTTCCAATTCCCACAAAAGATCCAAGAAAATATGTCGCCCTCTCATGTGGCATGAAAGAATCCGTATAGCTTCAGAAGTATGCTCGGGCCTGAGCTTCCTTCACCAAGTCCAACCTCAGCCCATTTCTCATGGCAAACTCACCCTGTCCAAAATTCTCCTGGACCAAAACCTTGCTGCCAAAGTCACTGGTTTTGGGCTCGATGAATCGAATGAAGCTAGTGGTACTGAGTTGGATATCCGAGCTTTTGGGGCTCTGTTGCTACATATTGTAACCGGGAGGACTTGGGAAGGGCTGACTGAGAAGGCATTGTCAATGGGTAAGGTGGGTCTGATCCAGATTCTAGATGATAAAGCTGGACAATGGCCATTGAGCTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGTTCCACTTTAGATGTTAACTTGGGGACCGCCATGGAAGAGATCGATGAGATCAAGAGGAAAGCAGATGATCTGGTGGTGGGAAATGGAAAGGATGTGGAAGGTATTGAAGGTACAGATGCAGCTAATGAGGACGTAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCTTACGAGCTAGAGGCCATAGGACAATGGATAAGAGCAGGACACGATACATCACCAATGACCAACTTGAAGCTGCAGCATCCTTATCTCACCCCTAATCATACTCTTCGCTCTCTAATTCAAGACTGGCAAAATGAGACCTCAAATGTTTAA 2421 43.0 MNGEAEKVFVAIGNDLHDGFKTLGWTLKKWKSHPISIVILHVAYNNSMEYVHTPFGKLPASSVSEEKVEVLRRYEKEKIDKLLSKYVDFCGKVRTEILKVEKSDEPVHKLIVDLISELGITNLVIGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRISKISSKNSLKGWLGKMFMEDPNYSSDRNLSLSSSSPISTNSLGSRNYWGYNVHELENYYEELLSLNLQEEEDCEQDQDGVLESSSSTQFNILDHPDSNMNAEERIEHLRTKIEEARKTIQLMKDEAKGSVERQAKAEWAINLCSQRTEELEAKIKEEVAIREELQTELDSAKDYILEIVGDIEESKIKLSSLLELQAELSSKLQFSTAGKSRLEAQLEKTAKTREGMVREIEELRRQREILHRRIEFCKDKDAIGMAERSTEVSCSTRVYTVEEIRLATDSFSEQMRLSSRVYRGRINHISVAIQMIDSGNRLSEDEFQSKVELLSHIRHPHLIAMMGFCPELKCIVFEYMHSGSLSDRLLPSNSHKRSKKICRPLMWHERIRIASEVCSGLSFLHQVQPQPISHGKLTLSKILLDQNLAAKVTGFGLDESNEASGTELDIRAFGALLLHIVTGRTWEGLTEKALSMGKVGLIQILDDKAGQWPLSLVDGLVDLALRCVTPNGSTLDVNLGTAMEEIDEIKRKADDLVVGNGKDVEGIEGTDAANEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIGQWIRAGHDTSPMTNLKLQHPYLTPNHTLRSLIQDWQNETSNV 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6457124 6461409 - Lsi01G008160.1 Lsi01g00816 653474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00816 806 CDD RING-Ubox_WDSUB1_like 737 778 - -
Lsi01g00816 806 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 4 802 - -
Lsi01g00816 806 Coils Coil 280 314 - -
Lsi01g00816 806 Gene3D Phosphorylase Kinase; domain 1 436 532 - -
Lsi01g00816 806 SUPERFAMILY RING/U-box 722 804 - -
Lsi01g00816 806 SMART Ubox_2 736 799 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 Coils Coil 392 433 - -
Lsi01g00816 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 731 806 IPR013083 -
Lsi01g00816 806 ProSiteProfiles Protein kinase domain profile. 453 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00816 806 Pfam Protein tyrosine and serine/threonine kinase 474 614 IPR001245 GO:0004672|GO:0006468
Lsi01g00816 806 ProSiteProfiles U-box domain profile. 732 806 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 PANTHER OS02G0152300 PROTEIN 4 802 - -
Lsi01g00816 806 Coils Coil 329 349 - -
Lsi01g00816 806 SUPERFAMILY Protein kinase-like (PK-like) 451 684 IPR011009 -
Lsi01g00816 806 Pfam U-box domain 733 804 IPR003613 GO:0004842|GO:0016567
Lsi01g00816 806 Gene3D Transferase(Phosphotransferase) domain 1 545 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00816 Lsi-Chr1:6457124 Lsi09g01569 Lsi-Chr9:23802565 7.18E-81 dispersed
Lsi01g00816 Lsi-Chr1:6457124 Lsi05g02044 Lsi-Chr5:27399888 4.86E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83264 PF07714 PK_Tyr_Ser-Thr 4.20E-18 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00816 - - csv:101208158 1350.11