Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00821 ATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAAAAGATGTATCCTCCTCAACCTGGAAGATTTGAAGATCGTGAAGATCTCATTAAATATGTTCGTGAATTTGGTGCTGATCAAGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTGTGTACCGTAATAGGCGTAAGATTGATGAGAGTCCACGCAAGAGGAAGGCTAGCTCGCGCCTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCTTGGATGCTTACCATTAAAAATGGGGACCATAACCATGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGACGTTTTACTGAGGATGAAGTAAAGCAAATAAAACGGATGACTGAAGCTGGTATAAAGCCACGACAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTATATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAAAGAATTTCAAGTCATGGAGACCTAATATTTCAGTTCCTACAAATAGTATTCATACTGTCATTGGGGATTCAGTCAAGGAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACTACCTACGAAGAGTTTAAGGTTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCGATTTCTACTCGTCAATGTGTTATGTTCAAGTTTCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACGAATATTGTCGCGGAACAGGGAAAAACGTTAAGGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAATGCATCTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACTGTTTCCTTATGGATGTTTCCGATTGCAGTTACATGTGGCAATACATTTATTCTTAAGCCATGTGAAACGCACCCAGGGGCTTCAATGTTGCTAGCTGCATTAGCAGTTGAGGCTGGCTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCGCCAACTATATATGTGATGATGAGGACATAAAAGCCATATCCTTTTCCAGTTCAAGTTCAGTTGGAAAGAACATATATGCGAGGGCTGCTGCTACAGGAAAGCAAGTTCAGTCCCACTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTTGGTACTGCAGGACGGACATGTATGGCCGTTGACATTGTTGTCTCTGTTGGGAGTTCAATTCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTGAAGTGAATGTGGGGACAGATCCTAAAGCTAACCTTGGTCCTGTAATTACTAAACATGTGAAAGATCGTTTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGACTTTTGCTTGATGGTAGAGATATTGTGGTCCCTGGATATGAAAATGGAAACTTTGTTGGTCCAACCATTTTATCTGATGTAACAACTGACATGGAGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCCGACAACCTAGAGGAGGCTATATCCATTGTAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCTTTTATGCTAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGGTTTGAAGCCAACTTCTGCTGTTGATCTAAATAAGGCAGGACTGGAATTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGAGTCTCAATGGCGATGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGTACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGTATGCAGCAGAGAAGTTTACCCCCATTGCCTTCCACATCTGAGAGGGATTCACCTAGCGTCGCTGTACTGCTGCCGAGCTCTCGAATATCTCATACAGGTTTAATCAATGAAAGAGTCACTTCCTCTCCGCCGACTCCTGATAGAGATTTGCACGGTCAGGGACTCTCCCTGATATCTACCTTGTCATCAGAGGGGGATGTATCCAACCAAGATTTGTCTCCTGCTATGCTTTCAGCAGGTGATAGAGATTTACCTGGTCAAGCTATGTCAGTGGCAACATCCCGATCATCTGAGAGACTGTATATACCACGGAAATCTCACTGGAATGCAACCCTGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGCCCTCATCGCAGACAAACAGCATCAAAGGGCAGGCATCTCGAACAACTCATCCTGCTTTGGTCTTAGCTGCAGAGGGGTTATATGTGCCAACATCTCATGACAGTATTTGTCTCATTAACCACGGAAATGACAGTACGGTTCCGTCTCAAAGAATCGACAGCATGTGTCAATCATCAGAACGAGTATACATGCTAGCAACTTCTCATCTGAACAACACTATGAGTCGAACATTGCAGAGAACTGATACCTCCTTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCTCTTCTGATGGAAATGACCACATCAGCTTAGCCTCTCATACCGAAGTTGCTTTGCAATCAACCTCAGATAGAATGTACTTGTCTACCTTGTCTGAGAGGGACGATAATATGGCTTCCGCTTCCTCTCAACAAGCCGAATCTTTAACATCCACTTCAGAGAGAATGTATACACCTCCATTAGTTCATAGAAATGCAGGTATGACACCAAAATCAGAATGGTCATGCATTCCCACGCCTGCTGTATCTCAGAGAATGTACCCACAAGGTCCAATAGTTTCAGCAGATGAATATCAAAGCCAAGGAGCATCATTGACATTGCCTGCATCGCAAAGAATGTAA 3174 42.97 MGTQGQTGLVAQKKMYPPQPGRFEDREDLIKYVREFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIDESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGDHNHEPLKDMSEHPYSRRFTEDEVKQIKRMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNFKSWRPNISVPTNSIHTVIGDSVKENHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKVAVNAAKQAFPSWRNTPISTRQCVMFKFQELILRDMDKLVTNIVAEQGKTLRDAQDDIICGLEVVKHACGLATMQMGEFIPNASDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFILKPCETHPGASMLLAALAVEAGLPDGVLNIVHGTHDIANYICDDEDIKAISFSSSSSVGKNIYARAAATGKQVQSHFGGKSHAIIMPDANMEATLSALVDAGFGTAGRTCMAVDIVVSVGSSILWEEKLVECAKALEVNVGTDPKANLGPVITKHVKDRFCKLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKEEFFGPVLLCMQADNLEEAISIVNRNKNRNGASIFTTSGFYARKFQSEVEVGMVGINVAVTVPLPSSFNGLKPTSAVDLNKAGLEFYTQLKRVAQQWKNSPSIGVSMAMPSPSERHLRSRAVPSMLVSTSEKDSPGMQQRSLPPLPSTSERDSPSVAVLLPSSRISHTGLINERVTSSPPTPDRDLHGQGLSLISTLSSEGDVSNQDLSPAMLSAGDRDLPGQAMSVATSRSSERLYIPRKSHWNATLRADSIPSSSERIHAPSSQTNSIKGQASRTTHPALVLAAEGLYVPTSHDSICLINHGNDSTVPSQRIDSMCQSSERVYMLATSHLNNTMSRTLQRTDTSLFSSSERHYVPPSSDGNDHISLASHTEVALQSTSDRMYLSTLSERDDNMASASSQQAESLTSTSERMYTPPLVHRNAGMTPKSEWSCIPTPAVSQRMYPQGPIVSADEYQSQGASLTLPASQRM 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6490990 6506851 - Lsi01G008210.1 Lsi01g00821 653479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00821 1057 MobiDBLite consensus disorder prediction 978 1002 - -
Lsi01g00821 1057 SUPERFAMILY ALDH-like 206 686 IPR016161 GO:0016491
Lsi01g00821 1057 MobiDBLite consensus disorder prediction 1 20 - -
Lsi01g00821 1057 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 231 659 IPR016162 GO:0016491
Lsi01g00821 1057 MobiDBLite consensus disorder prediction 842 862 - -
Lsi01g00821 1057 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 1056 IPR010061 GO:0004491
Lsi01g00821 1057 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 457 656 IPR016163 GO:0016620
Lsi01g00821 1057 MobiDBLite consensus disorder prediction 712 742 - -
Lsi01g00821 1057 Pfam Aldehyde dehydrogenase family 227 680 IPR015590 GO:0016491
Lsi01g00821 1057 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 1 1056 - -
Lsi01g00821 1057 CDD ALDH_F6_MMSDH 212 684 IPR010061 GO:0004491
Lsi01g00821 1057 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 214 684 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00821 Lsi-Chr1:6490990 Lsi03g00690 Lsi-Chr3:8949576 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00821 K00140 - csv:101207178 1867.82