Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00823 ATGGCAGCGACAAAGCCTAGGACAAGCAGCTTCTCACGCAACTTTTCTTCTGCTCATTCATCTAAGACGCCAGGACTTAAACATGGTCCCAATGGCACCACATTCATCTCATCCGGAATATCAGACCTTGACAGTACTTTCAGCACCATACTCATCAGTTCAAAATTGTTGGAATTTGAAATGTTGAAGAGTTCTAATCTATATCCATATTCTGCATTGGGACTAGCCTCAATTTCTCCATTTTTTCGGTTGCAGAGATTCTTTGTGGGACTTCTTCACAACCAATCTCTTCTTTATGCTAGTCCATCCAGAGACCCAAGAGGATTCTTGGGTACTTTGCCAAGCCCAGGGACATCAAAAGATGATAAATCTCGTGATAATTCTACCGAACAGGAGAAGGGCTTGAGGATTGCTTGGCAATATAAGAAGTATTTTGGAGACGATCAAGAGAACACCAATGCCATTGATAGTAAATACGAGTTTTGCAATGACTTTGATTTGCGAAGGCCATTTGACAGACATTTTTTCAGCGGAAAACATGTGGAATGTGTTAGTATTCTAGATTCTTCTAGTCTTTCTACTCTTCGTGATCGCTGTGCCACATTCCTATCACAAGTTCCAAGAAATGATGGCAATATATCCTCTGCTGGCCGTATTGCCATTCAATCATTATGTGCTCCACAATGCGATCACTCCAACATGGAATGGGAAATGCTTTCCTTTTTAAGGTCTCTGAAAAGCATGCTAAGGTCCTCAAATGCAGTAGCTGTAGTAACGTTTCCACCTTCTCTTCTTTTGCCGTCCTTCTCTAAAAGATGGCAGCACATGGCAGATACCTTGCTTTCTGTCAGAGCAATCCCAGATGAGGATAAGGAATTAGCAAAGCTCCTCACTGGTTACCAAGACATGGTTGGTCTTCTCAATGTGCATAAAGTAGCTCAAATCAATACGCAGGTTCCAAAGATCCTTGAGGCGACTACATTCTCTATAAAGTTGCAAAAGAGAAGGTATTTAGTTTTGGAATGTCTTAATCAAGCTCCTATTGATGGTTCAAGCGGCAGCTCATATGGCTCTACTGGGAGTTGTTCTGTGTCCTCTAAGACAGGAATTGGGTTCAAGCTTTCCCCAGCTCCTTCTCATCAATGGACTCCTGACATTACGATGGGGAAATCACCGGCGGAAGAGCATCCTAAGAAGGCTTTCGGGTGGGCTGCTACAGATACCTCCGGCCTTCTTTCTCCATTTCATTTCTCCAGAAGAGAAACAGGGGAAAAGGATGTAGCTTTTAAAGTTCTTTACTGTGGAATTTGCCATTCTGACCTTCACATGGTGAAGAATGAGTGGGGAACTACCATTTACCCTATTGTTCCTGGGCATGAAATCGTGGGCGAGGTAACAGAGGTTGGAAGCAAAGTGAAGAATTTCAAGGTCGGAGACAAAGTTGGCGTAGGATGTATGGTCCAATCCTGCCGCTCCTGTGATAACTGTTCCAACGACCTCGAAAACTATTGCCCCAAAATGATCCTCACCTACTCCAGCAAGGACTCCGACGGGACCATAACCTACGGAGGCTACTCCGACTGTATGGTTGCTGACGAGCATTTCATTGTTCGCATTCCCGATGGCATCCCTCTGCATGCCGGGGCTCCCCTGCTGTGCGCTGGTATCACGGTTTACAGCCCCTTGAGATACTTTGGACTTGACAAGCCTGGAATGCAAATTGGCGTGGTTGGCCTCGGTGGACTTGGCCATGTCGCTGTCAAATTCGCTAAGGCCTTTGGTGCTAAGGTTACTGTGATTAGTACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACATCTTGGGGCTGATTCATTCCTGGTCAGCCGTGATCAAGAGCAATTGCAGGCTGCTAGGGGGACTTTGGATGGTATCATTGACACAGTCTCTGCTGCACATCCCCTTCTTCCTCTGCTGTCTCTTGTAAAAACACATGGAAAGTTTGTTATGGTTGGTGCACCAGAAAAGCCACTTGAGCTCCCAGCGTTTGCTCTTATTGGGGGTAGGAAAACAATGGCCGGTAGTTGCATTGGAGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATAACTGCAGATGTCGAGGTGATTCCGATCGCTGATGTCAACAAGGCAATGGAACGGATGCTGAAACAGGATGTCAAGTATCGATTCGTCATCGACATTGCCAACTCATTGAAACCTAGTGGTTAA 2247 45.35 MAATKPRTSSFSRNFSSAHSSKTPGLKHGPNGTTFISSGISDLDSTFSTILISSKLLEFEMLKSSNLYPYSALGLASISPFFRLQRFFVGLLHNQSLLYASPSRDPRGFLGTLPSPGTSKDDKSRDNSTEQEKGLRIAWQYKKYFGDDQENTNAIDSKYEFCNDFDLRRPFDRHFFSGKHVECVSILDSSSLSTLRDRCATFLSQVPRNDGNISSAGRIAIQSLCAPQCDHSNMEWEMLSFLRSLKSMLRSSNAVAVVTFPPSLLLPSFSKRWQHMADTLLSVRAIPDEDKELAKLLTGYQDMVGLLNVHKVAQINTQVPKILEATTFSIKLQKRRYLVLECLNQAPIDGSSGSSYGSTGSCSVSSKTGIGFKLSPAPSHQWTPDITMGKSPAEEHPKKAFGWAATDTSGLLSPFHFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGTTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVQSCRSCDNCSNDLENYCPKMILTYSSKDSDGTITYGGYSDCMVADEHFIVRIPDGIPLHAGAPLLCAGITVYSPLRYFGLDKPGMQIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKQEAIEHLGADSFLVSRDQEQLQAARGTLDGIIDTVSAAHPLLPLLSLVKTHGKFVMVGAPEKPLELPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEVIPIADVNKAMERMLKQDVKYRFVIDIANSLKPSG 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6523361 6533589 + Lsi01G008230.1 Lsi01g00823 653481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00823 748 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 388 747 - -
Lsi01g00823 748 Pfam PAXNEB protein 21 364 IPR008728 GO:0002098|GO:0033588
Lsi01g00823 748 PANTHER ALDEHYDE REDUCTASE 388 747 - -
Lsi01g00823 748 Pfam Zinc-binding dehydrogenase 581 704 IPR013149 -
Lsi01g00823 748 Gene3D - 554 710 - -
Lsi01g00823 748 SUPERFAMILY GroES-like 407 571 IPR011032 -
Lsi01g00823 748 Gene3D - 18 350 IPR027417 -
Lsi01g00823 748 CDD CAD1 401 739 - -
Lsi01g00823 748 Pfam Alcohol dehydrogenase GroES-like domain 425 538 IPR013154 -
Lsi01g00823 748 Gene3D - 403 740 - -
Lsi01g00823 748 MobiDBLite consensus disorder prediction 1 31 - -
Lsi01g00823 748 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 544 708 IPR036291 -
Lsi01g00823 748 MobiDBLite consensus disorder prediction 108 133 - -
Lsi01g00823 748 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 458 472 IPR002328 GO:0008270|GO:0016491
Lsi01g00823 748 SMART PKS_ER_names_mod 410 738 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00823 Lsi-Chr1:6523361 Lsi10g00698 Lsi-Chr10:9757281 5.91E-165 dispersed
Lsi01g02015 Lsi-Chr1:27537594 Lsi01g00823 Lsi-Chr1:6523361 1.43E-12 dispersed
Lsi04g01480 Lsi-Chr4:22513150 Lsi01g00823 Lsi-Chr1:6523361 1.68E-06 dispersed
Lsi01g00823 Lsi-Chr1:6523361 Lsi05g00239 Lsi-Chr5:3151036 3.82E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00823 - K23232 csv:101222715 684.1