Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00824 ATGGAGAAGAAAGCCAAAAGAAAAAGACAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTCCTTTTCTTATTCTTCAGTTTATCTCTCGCCATGGCCAATCCACAACAACAAGATTCCTCCCAACAAAGAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGTGACGTAACGTTCGAATGGCAGAATCGTGGACGGGTGGTAATTGACAATGGGTTAGTTCGAGTCACTTTATCTCGTCCGGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAACATAACAGAGGATATTGGGACGTGGTTTGGAACCACCCAAATAGAGCTAGTTCCACTGACAGAGTAAGGGCGACAGAATTCAAAGTGGTTACGGCCAACAGCGACCAAATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTCTTCACTTCCTTTGAACATAGACAAAAGATATATTCTGCGACGCGGTGACTCTGGATTCTATTCCTATGGTATATTTGAACGACTTGATGGATGGCCTCAAATTGCCGTTGATCAGATTAGGATCGCCTACAAACTCCAAGGGGACAAATTTCATTACATGGCGGTATCGGACGACAGACAGAGGATCATGCCAACGTTACATGACCGTCTGACCGGACGAGTAAGGGCGACAGAATTCAAAGTGGTTACGGCCAACAGCGACCAAATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTCTTCACTTCCTTTGAACATAGACAAAAGATATATTCTGCGACGCGGTGACTCTGGATTCTATTCCTATGGTATATTTGAACGACTTGATGGATGGCCTCAAATTGCCGTTGATCAGATTAGGATCGCCTACAAACTCCAAGGGGACAAATTTCATTACATGGCGGTATCGGACGACAGACAGAGGATCATGCCAACGTTACATGACCGTCTGACCGGACGGTCTCTAGCTTATCCAGAGGCGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAAAACAAGGTTCATGGATGGGAGTCAAGTGATCCACACGTGGGATTCTGGATGATTACGCCCAGTGATGAGTTTCGCACGGCCGGGCCCCACAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCTATGTTCGTGAGTACGCATTATGCTGGCAAAGAAGTTTCCATGAGATTCGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAACCAGATGAGGATAGAAACGAGTAAGTGGCCATACAACTTTGTTGAATCCGAAGACTTTCCATCGTCAGACCAAAGAGGAACCGTGACAGGTCGATTACTAGTCCGAGATAGGTTTGTTCCGTTGCTTTCATTTGTCTTCCATGTCTTGTCTTTGTCACGTCCTCAAAGCTACGTCGTTTTCTTCTTTGGCAGATACGCTGAAGAGTCACAGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTGGGGTCTTGGCAAAGGCAAAGCAAGGGATACCAGTTCTGGACACGCGCAGACGAGCAAGGATACTTCTCAATCAACAACATTAGGCCAGGAAACTACAATCTCTATGCTTGGGTACCAGGTGTCATCGGCGATTACAAGTACGACAATGAAATCACCGTCACACCAGGGAGTTCCACCGGCCTAAACTTGTTGGTCTACGACCCTCCAAGACGAGGCCCAACTTTATGGGAGATCGGCTTCCCAGATCGGACGGCAGCTGAGTTCTATATACCTAATCCCCAACCCACCCTCATGAACCGCTTATACAACAATTCCAAATTCCACACCCAAGATAATTTCCGACAATATGGTCTCTGGGATCGCTACTCTGAATTGTATCCCCATCAAGATCTCATCTACAACGTCGCCACCGATGATTACCGTCGTCATTGGTTCTTCGCTCACGTCACAAGAGCCACTAGTTCCGATACCTACGAGGCAACCACGTGGCAAATTGTGTTTCGTCTTCAAGGGCCTAAACAGATCGGTAGCTATATGCTCCGACTGGCCTTGGCCTCCTCAACCGAGGCGGTGGTGGATATCCGGTTCAACAATCCGTCTGCGAGACGGGTTCATTTCACGACCGGGTATTGGTCCTCGGGGAAAGATAATGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTATTCAACTTCAAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAATGTAATCTATCTTACACAGAGAAGACATACAGGGCCTTTTCAAGGAGTAATGTACGACTACATACGGTTTGAAGGTGTAGAGTAA 2433 46.57 MEKKAKRKRQQKKLEFPAMAALLFLFFSLSLAMANPQQQDSSQQRMVENLVENNNKSMLSRDVTFEWQNRGRVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQHNRGYWDVVWNHPNRASSTDRVRATEFKVVTANSDQIELSFTKTWDPSDSSSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIAVDQIRIAYKLQGDKFHYMAVSDDRQRIMPTLHDRLTGRVRATEFKVVTANSDQIELSFTKTWDPSDSSSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIAVDQIRIAYKLQGDKFHYMAVSDDRQRIMPTLHDRLTGRSLAYPEAVDDKYQYSLENMENKVHGWESSDPHVGFWMITPSDEFRTAGPHKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRFVPLLSFVFHVLSLSRPQSYVVFFFGRYAEESQMWADSAYVGLAAPGELGSWQRQSKGYQFWTRADEQGYFSINNIRPGNYNLYAWVPGVIGDYKYDNEITVTPGSSTGLNLLVYDPPRRGPTLWEIGFPDRTAAEFYIPNPQPTLMNRLYNNSKFHTQDNFRQYGLWDRYSELYPHQDLIYNVATDDYRRHWFFAHVTRATSSDTYEATTWQIVFRLQGPKQIGSYMLRLALASSTEAVVDIRFNNPSARRVHFTTGYWSSGKDNAIARHGIHGLYWLFNFKVPSEYLVEDENVIYLTQRRHTGPFQGVMYDYIRFEGVE 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6532837 6539162 - Lsi01G008240.1 Lsi01g00824 653482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00824 810 Gene3D - 521 602 - -
Lsi01g00824 810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 232 808 - -
Lsi01g00824 810 Pfam Polysaccharide lyase family 4, domain III 612 805 IPR029411 -
Lsi01g00824 810 Gene3D - 610 806 - -
Lsi01g00824 810 Gene3D - 231 443 IPR014718 GO:0030246
Lsi01g00824 810 CDD RGL4_C 614 807 - -
Lsi01g00824 810 CDD RGL4_M 476 600 IPR029413 -
Lsi01g00824 810 Pfam Rhamnogalacturonate lyase family 53 233 IPR010325 -
Lsi01g00824 810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 62 233 - -
Lsi01g00824 810 CDD RGL4_N 224 438 - -
Lsi01g00824 810 SUPERFAMILY Galactose-binding domain-like 610 807 IPR008979 -
Lsi01g00824 810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 62 233 - -
Lsi01g00824 810 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 232 808 - -
Lsi01g00824 810 SUPERFAMILY Starch-binding domain-like 541 602 IPR013784 GO:0030246
Lsi01g00824 810 Pfam Polysaccharide lyase family 4, domain II 526 597 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00824 Lsi-Chr1:6532837 Lsi04g02290 Lsi-Chr4:30035350 2.29E-07 dispersed
Lsi01g00824 Lsi-Chr1:6532837 Lsi04g02289 Lsi-Chr4:30016075 1.06E-29 wgd
Lsi01g00824 Lsi-Chr1:6532837 Lsi05g00795 Lsi-Chr5:11611605 1.27E-40 wgd
Lsi01g00824 Lsi-Chr1:6532837 Lsi08g01009 Lsi-Chr8:18634330 3.15E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00824 K18195 - csv:101206696 958.362