Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00825 ATGGCAAGTAGACAAGTGACTTTCTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCAAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTCTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACATTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTGCTATTGAATCCAATTTCAGATGTCAAGTTATGGCAAAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAATAATAGGAAGTTGATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTTAGCTTACAAAGCATCCGAATTAAAAAGATATTAAGCACAGAGAAAAGCAATTCAATGAGATCAAAAACACAATTCCAAAATGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTATGATGCACCAAGAAAATATAGAGCTGAGCAATAAAGTAAATCTTTTTTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCCAGATCAGAGATGAACTTAGCCACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCTGACGCCGCCGTCCCTATTGCAGGCGACGCCCTACGTGTGCCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 726 38.84 MASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIHSVIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKILSTEKSNSMRSKTQFQNEQILNDEIKELNRKGIMMHQENIELSNKVNLFCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAADAAVPIAGDALRVPIHLQLSPPEQQA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6548261 6551265 + Lsi01G008250.1 Lsi01g00825 653483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00825 241 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lsi01g00825 241 SUPERFAMILY SRF-like 3 64 IPR036879 GO:0003677|GO:0046983
Lsi01g00825 241 Gene3D - 1 72 IPR036879 GO:0003677|GO:0046983
Lsi01g00825 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 44 IPR002100 GO:0003677|GO:0046983
Lsi01g00825 241 Pfam K-box region 72 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi01g00825 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 2 240 - -
Lsi01g00825 241 Coils Coil 73 100 - -
Lsi01g00825 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 240 - -
Lsi01g00825 241 PRINTS MADS domain signature 10 25 IPR002100 GO:0003677|GO:0046983
Lsi01g00825 241 PRINTS MADS domain signature 25 46 IPR002100 GO:0003677|GO:0046983
Lsi01g00825 241 SMART madsneu2 1 47 IPR002100 GO:0003677|GO:0046983
Lsi01g00825 241 CDD MADS_MEF2_like 3 64 IPR033896 GO:0000977|GO:0045944
Lsi01g00825 241 ProSiteProfiles K-box domain profile. 73 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00825 Lsi-Chr1:6548261 Lsi05g01991 Lsi-Chr5:26983362 3.38E-32 dispersed
Lsi03g00982 Lsi-Chr3:18966933 Lsi01g00825 Lsi-Chr1:6548261 6.84E-24 dispersed
Lsi01g00825 Lsi-Chr1:6548261 Lsi04g02291 Lsi-Chr4:30056403 2.48E-66 wgd
Lsi01g00825 Lsi-Chr1:6548261 Lsi08g01026 Lsi-Chr8:18835515 3.81E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24616 PF01486 K-box 6.10E-21 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00825 K09264 - csv:101206453 388.652