Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00831 ATGGAGCTCAGTCAACATAGTTTCTTAGAAGAGTTATTAGCCTCAACGCCTTGGACCTCCTCATACTCAAATGGGTTCAATGATTTCTTCCAAAATGGTTGGAATTTCACTTCCTTTGATGAAAATCCCCAAATGGGTACCTCTATTTTCCCCAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTTTACGGCAATTTTCACGAAGGGTTTGCAATACCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAGGAAGAACTTGGTTTTATGGAGAGTGAAACAGCTCCAAATGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTCGCAGAATTAGGGAAAAGAAGCAGCAACAAGGCTAAGAAAATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGGAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCATGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAATGAAGTTCAAATGAGGAATTCCCCAAAGTTCGATGTTGAAAGGAAGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTGCTGTCCACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAAGCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1029 42.08 MELSQHSFLEELLASTPWTSSYSNGFNDFFQNGWNFTSFDENPQMGTSIFPNFPGIQTANDFSFADQQLYGNFHEGFAIPELDSSSYTKNNETPPFVSQEEMSNKNSGYPPAAMEEEEELGFMESETAPNVCKVEMEQMGLRETNGSKMGVAELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQMRNSPKFDVERKERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKEALFRNAGYGGKCL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6593034 6594922 + Lsi01G008310.1 Lsi01g00831 653489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00831 342 CDD ACT_UUR-ACR-like 268 309 - -
Lsi01g00831 342 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Lsi01g00831 342 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 342 - -
Lsi01g00831 342 MobiDBLite consensus disorder prediction 84 106 - -
Lsi01g00831 342 MobiDBLite consensus disorder prediction 84 111 - -
Lsi01g00831 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Lsi01g00831 342 SMART finulus 173 222 IPR011598 GO:0046983
Lsi01g00831 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 229 IPR036638 GO:0046983
Lsi01g00831 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 342 - -
Lsi01g00831 342 Gene3D - 158 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00831 Lsi-Chr1:6593034 Lsi05g00449 Lsi-Chr5:5739400 2.30E-39 dispersed
Lsi02g00527 Lsi-Chr2:4582571 Lsi01g00831 Lsi-Chr1:6593034 4.84E-36 transposed
Lsi05g00926 Lsi-Chr5:16421084 Lsi01g00831 Lsi-Chr1:6593034 1.85E-09 transposed
Lsi01g00831 Lsi-Chr1:6593034 Lsi04g02300 Lsi-Chr4:30168884 6.03E-68 wgd
Lsi01g00831 Lsi-Chr1:6593034 Lsi08g01047 Lsi-Chr8:19041201 6.35E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24617 PF00010 HLH 2.10E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00831 - - csv:101205974 622.854