Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00847 ATGCGTCTTCTTCTTCTTCTTCTTCTCTTCTGTCTTCTGCAACTCCACATTCATCACTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCCCTTCTCTCCCTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTCTCTTCCTGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACTTGCGATCTTCGTCGCCATGTCACTGCCTTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCCCTTTCCCCTGATGTTGCCTTTTTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGACTTTTCCGGTCCAATCCCGCCGGAGATTTCTTCAGTCTCTTCGCTTCGGCTCCTTAACCTGTCTAACAATGTGTTCGATGGGTCGTTCCCTTCACGGCTTTCGCAGCTCCAGAATCTCCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTTCCCATTGTGGTCACTGAAATGCCGAGCCTCCGCCATTTGCATTTGGGTGGAAATTTCTTTTCCGGACGTATCCCTCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCCGGTAACGAACTTAGTGGTTCGATACCGCCGGAGATCGGAAACCTTACAAACCTTCGTGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAATTTGTCGAAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGCCGGATTCCCCCGGAGCTTGGAAAGCTGCAGAATCTCGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAACAGCTTGAAATCTTTGGATTTGTCAAACAATATGCTTGTGGGTGAGATTCCCGTCTCGTTCGCCGAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCAAAGCTGGAGGTATTGCAGTTATGGGAGAATAACTTCACTGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGATCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCGCTTAACCGTATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCGAAGCTCTCTCAGGTGGAGTTACAGGACAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCAATCTCATTGAATCTTGGCCAGATTAGTCTTTCGAACAACCGACTCACCGGGTCGATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTCCTTGACGGAAACAAGTTCACCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTTTCGAAGATAGATTTCAGTAACAATAAGCTATCCGGTTCAATCACGCCGGAAGTTAGCCAATGCAAGCTACTAACCTTCGTCGATCTCAGCCGAAACGAGCTATCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACCTGAATCTCTCAAAAAACCACTTAGTCGGCGGAATCCCTGCTTCCATATCCAGCATGCAGAGTTTAACCTCCGTTGATTTCTCATACAACAACCTCTCTGGGTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAAGGCCCTCTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGTTAAAGAGAGCCAGTGAGTCTCGAGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCTGGAATTGTCTATAAAGGGGCTATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGTGGATCGTCTCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGAAGGATTCGACATCGACATATTGTAAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGTTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCCGCTAAAGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTCGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACACTAAAAGTTGACGAGAAAAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAGCTAGTTAGTGGAAGAAAACCCGTCGGAGAATTCGGGGATGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTCGATCCAAGGCTCTCCTCCGTGCCTCTCCATGAAGTAATGCACGTCTTCTACGTCGCAATGCTGTGCGTCGAGGAACAGGCAGTGGAGCGCCCGACAATGCGAGAAGTGATTCAAATCCTATCGGAGATTCCTCAGCCACCATGTTCAAAACAGGGAGGAGATTCAACACTCCCCAACTCCTCACCACCCCCACCACCACCAGCTGCCGATTTAGACCTTCCAACAACAGGAACCAAGAACAAAAAAGACCATCAGCAGCAGCCGCCACCAGATCTTCTTAGCATTTGA 3054 47.22 MRLLLLLLLFCLLQLHIHHSLSARVSEYRALLSLKTSITGDPKSSLSSWNASTSHCTWFGVTCDLRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANDFSGPIPPEISSVSSLRLLNLSNNVFDGSFPSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMPSLRHLHLGGNFFSGRIPPEVGRMQSLEYLAVSGNELSGSIPPEIGNLTNLRELYIGYFNAYDGGIPAEIGNLSKLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGELNSLKSLDLSNNMLVGEIPVSFAELKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFTGQIPPEIGRLQQLSKIDFSNNKLSGSITPEVSQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKQGGDSTLPNSSPPPPPPAADLDLPTTGTKNKKDHQQQPPPDLLSI 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6791970 6796302 + Lsi01G008470.1 Lsi01g00847 653505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00847 1017 ProSiteProfiles Protein kinase domain profile. 691 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00847 1017 SMART serkin_6 691 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00847 1017 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515
Lsi01g00847 1017 Pfam Protein tyrosine and serine/threonine kinase 693 962 IPR001245 GO:0004672|GO:0006468
Lsi01g00847 1017 Gene3D Phosphorylase Kinase; domain 1 656 768 - -
Lsi01g00847 1017 Pfam Leucine rich repeat 116 173 IPR001611 GO:0005515
Lsi01g00847 1017 Gene3D Ribonuclease Inhibitor 89 346 IPR032675 -
Lsi01g00847 1017 Gene3D Ribonuclease Inhibitor 20 88 IPR032675 -
Lsi01g00847 1017 SUPERFAMILY Protein kinase-like (PK-like) 683 962 IPR011009 -
Lsi01g00847 1017 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 978 - -
Lsi01g00847 1017 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 978 - -
Lsi01g00847 1017 Gene3D Ribonuclease Inhibitor 347 620 IPR032675 -
Lsi01g00847 1017 SMART LRR_typ_2 283 306 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 571 594 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 356 379 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 114 138 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 331 355 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 499 523 IPR003591 -
Lsi01g00847 1017 SMART LRR_typ_2 162 186 IPR003591 -
Lsi01g00847 1017 MobiDBLite consensus disorder prediction 966 1017 - -
Lsi01g00847 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Lsi01g00847 1017 Gene3D Transferase(Phosphotransferase) domain 1 769 973 - -
Lsi01g00847 1017 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lsi01g00847 1017 SUPERFAMILY RNI-like 72 393 - -
Lsi01g00847 1017 MobiDBLite consensus disorder prediction 1002 1017 - -
Lsi01g00847 1017 SUPERFAMILY L domain-like 300 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00847 Lsi-Chr1:6791970 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi09g01168 Lsi-Chr9:18893062 Lsi01g00847 Lsi-Chr1:6791970 0 dispersed
Lsi11g00378 Lsi-Chr11:3882467 Lsi01g00847 Lsi-Chr1:6791970 4.25E-156 dispersed
Lsi01g00847 Lsi-Chr1:6791970 Lsi01g00848 Lsi-Chr1:6811617 0 tandem
Lsi02g01741 Lsi-Chr2:23105587 Lsi01g00847 Lsi-Chr1:6791970 6.44E-12 transposed
Lsi04g00493 Lsi-Chr4:4540822 Lsi01g00847 Lsi-Chr1:6791970 8.14E-69 transposed
Lsi04g01384 Lsi-Chr4:21632518 Lsi01g00847 Lsi-Chr1:6791970 8.95E-91 transposed
Lsi04g01757 Lsi-Chr4:24821483 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
Lsi05g00741 Lsi-Chr5:10246636 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
Lsi05g01053 Lsi-Chr5:18048728 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
Lsi07g00100 Lsi-Chr7:1134112 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
Lsi09g00831 Lsi-Chr9:9526594 Lsi01g00847 Lsi-Chr1:6791970 6.96E-142 transposed
Lsi01g00847 Lsi-Chr1:6791970 Lsi04g02324 Lsi-Chr4:30444518 7.81E-150 wgd
Lsi01g00847 Lsi-Chr1:6791970 Lsi05g00800 Lsi-Chr5:11817984 0 wgd
Lsi01g00847 Lsi-Chr1:6791970 Lsi08g01054 Lsi-Chr8:19156987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83265 PF07714 PK_Tyr_Ser-Thr 3.00E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00847 - - csv:101219011 1890.55