Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00848 ATGAGAGGCAATTTTATATGCAAACAAATGTGGCTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCACTTCCTTCTCTGCCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTGACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGCCGCCATCGCCGCCTACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCACGTCGTTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACCGTTTCCCCTGACCTTGCCTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGCATCTTAATCTCTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCAAAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGTCCAACCTCCGCTATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTTCAATACCGCCGGCGATCGGAAACTTGACGAAGATTCGGGAACTCTTCATTGGTTACTACAACACCTTCGTCGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGTTGTGGGTTGACCGGAAAATTTCCGCCGGAGCTCGGAAAGTTGCAGAAGCTCACTAAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAATTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTTCCAAAGCTGGAGATATTGCAATTATGGAACAATAATTTCACTGGTTCGTTCCCCCGAAATATGGGGAAGAACGGAATGCTTCGGACTCTTGACCTTGCTTTCAACCAGTTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTGTCTGGTTCGATCCCAGAATCATTGGGGAATTGTATTTCACTTAAGCGTATACTTCTATGGGGAAACGCTCTTAATGGATCAATTCCAAAAAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCATGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCAGTTAACCTTCTTCAGATAAGTTTATCGAATAATATGCTTTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCACATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAAAATAAGTTTTCTGGTACAATTGTGCCGGAGATAAGTGAGTGCAAGCACTTGATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATTCCGAACCATATTACCAACATGAAGTTGTTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAATATGCAGAGCTTAACCTCTATAGATTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGAGCATATTTGGGGCCTTGCAAAGATGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGATTTTTTTTTTGTTTAGTTGCAGTGACAGTTGCATTGATCTTCAAACTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCAAGTGGTGATCAGATCACTGTGAAAAGGCTTCCAAAGATGAGCAATGAGTGTTCTCGTGACCACGAATTTGATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGTCACATCGTTAGATTATTGGGTCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGCCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTCTGGGATACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTTTGCTATCTTCACCACCATTGCTCACCGCCCATTGTTCATCAAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGATGCTCAGATTGCCAATTCCGGGCTAGCAAAATTCTTACAAGATTCAGGGACATTGGATACGTCAGCTACCGAGCCAGAGCATGCCTACGCACTGAATGCCGACGAGAAGTGGGATGTGTATAGCTTCGGTGTTGTCCTCTTGGAACTCATTAGCGGAAGGAATCCAGTCGGAGAACTATGCGACAGTGTCGACATAGTTCAATGGATTAGAAACATGACAGACTCAGAAAAGGAAGGAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTTCCCCTCGACGAAGTGATGCACGTGCTCAATGTTGCCATGCTTTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACAATGCGGGAAGTCGTCCGGATCTTAACCGAGCATCAGCAACAATCATTCTCAAAGGAAAACAGAGATACATAA 2931 45.14 MRGNFICKQMWLLLVFVLLQLHFSTSFSAFLPESQALLSLKSSISDDPRSSLSSWNAAAIAAYCTWFGVTCDARRHVVALHLSSLDLAGTVSPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQHLNLSSNVLNGSIPREFSKLKNLQVLDVYNNNLTGDFPRVVTEMSNLRYLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGSIPPAIGNLTKIRELFIGYYNTFVGGIPATIGNLSELVRLDAASCGLTGKFPPELGKLQKLTKLYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSFPRNMGKNGMLRTLDLAFNQLTGTIPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLHDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGHIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPNHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSIDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVLASNHQEHMKGSLSTPLRLLLVFGFFFCLVAVTVALIFKLRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITVKRLPKMSNECSRDHEFDAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHQNVKSNNIMLDTNFDAQIANSGLAKFLQDSGTLDTSATEPEHAYALNADEKWDVYSFGVVLLELISGRNPVGELCDSVDIVQWIRNMTDSEKEGIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSFSKENRDT 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6811617 6815131 + Lsi01G008480.1 Lsi01g00848 653506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00848 976 Pfam Protein tyrosine and serine/threonine kinase 699 961 IPR001245 GO:0004672|GO:0006468
Lsi01g00848 976 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 968 - -
Lsi01g00848 976 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Lsi01g00848 976 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 968 - -
Lsi01g00848 976 SUPERFAMILY L domain-like 363 622 - -
Lsi01g00848 976 Gene3D Phosphorylase Kinase; domain 1 671 775 - -
Lsi01g00848 976 Pfam Leucine rich repeat 124 181 IPR001611 GO:0005515
Lsi01g00848 976 SUPERFAMILY Protein kinase-like (PK-like) 692 961 IPR011009 -
Lsi01g00848 976 Gene3D Ribonuclease Inhibitor 187 286 IPR032675 -
Lsi01g00848 976 Gene3D Ribonuclease Inhibitor 287 361 IPR032675 -
Lsi01g00848 976 Gene3D Ribonuclease Inhibitor 362 626 IPR032675 -
Lsi01g00848 976 SMART LRR_typ_2 338 362 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 122 145 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 267 290 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 170 194 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 578 601 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 482 506 IPR003591 -
Lsi01g00848 976 SMART LRR_typ_2 363 386 IPR003591 -
Lsi01g00848 976 Gene3D Transferase(Phosphotransferase) domain 1 776 976 - -
Lsi01g00848 976 SUPERFAMILY RNI-like 80 424 - -
Lsi01g00848 976 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Lsi01g00848 976 Pfam Leucine Rich Repeat 533 553 IPR001611 GO:0005515
Lsi01g00848 976 ProSiteProfiles Protein kinase domain profile. 698 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00848 Lsi-Chr1:6811617 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi01g00847 Lsi-Chr1:6791970 Lsi01g00848 Lsi-Chr1:6811617 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83266 PF07714 PK_Tyr_Ser-Thr 2.30E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00848 - - csv:101204543 1744.55