Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00857 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTAACTCTTCCCTCTAATCCTTCTTATCTTTCTCAAAAACCCAAGAAGCCTGTGGATTTGCTCTGTTTTCCCGCCCCTGAATCTGAGCCCTCCTTAACTTTGGGGCTTTCCACCGTCGACACTTACCCACCTGAAACGGCGGATTTGTCTCGTCAACCGTCGCCTCAGAGTGCCATTTCTTCCTTCTCTGGAGGCAGGGTCAAGCGTGAAAGAGATGTTTCCGGTGAAGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGCGATGAAGATGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGTACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAATAGGAGGCTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGCGAGCGGATCGGCGGTGGCACCGCCGCTGTCAACGGCGACGGAAATTCCAAGGGCCCATTTTCGATGGCCCCCAACCCCCAGTTTTACAAAGCCTTCACCAAGCCTTCTGCTGCTTGCTAA 792 48.36 MGFDDLSNTGLLLGLGLTLPSNPSYLSQKPKKPVDLLCFPAPESEPSLTLGLSTVDTYPPETADLSRQPSPQSAISSFSGGRVKRERDVSGEDIEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGTAAVNGDGNSKGPFSMAPNPQFYKAFTKPSAAC 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6862407 6864541 - Lsi01G008570.1 Lsi01g00857 653515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00857 263 MobiDBLite consensus disorder prediction 81 117 - -
Lsi01g00857 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 263 - -
Lsi01g00857 263 MobiDBLite consensus disorder prediction 20 117 - -
Lsi01g00857 263 CDD homeodomain 114 171 IPR001356 GO:0003677
Lsi01g00857 263 SUPERFAMILY Homeodomain-like 104 171 IPR009057 -
Lsi01g00857 263 SMART halz 170 213 IPR003106 GO:0006355|GO:0043565
Lsi01g00857 263 Pfam Homeobox associated leucine zipper 170 204 IPR003106 GO:0006355|GO:0043565
Lsi01g00857 263 Pfam Homeodomain 114 168 IPR001356 GO:0003677
Lsi01g00857 263 Coils Coil 176 206 - -
Lsi01g00857 263 Gene3D - 107 175 - -
Lsi01g00857 263 PANTHER - 1 263 - -
Lsi01g00857 263 MobiDBLite consensus disorder prediction 47 79 - -
Lsi01g00857 263 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Lsi01g00857 263 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Lsi01g00857 263 SMART HOX_1 112 174 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00857 Lsi-Chr1:6862407 Lsi02g02612 Lsi-Chr2:32506859 2.38E-74 dispersed
Lsi06g01229 Lsi-Chr6:22684196 Lsi01g00857 Lsi-Chr1:6862407 1.20E-60 transposed
Lsi07g01279 Lsi-Chr7:18633125 Lsi01g00857 Lsi-Chr1:6862407 6.62E-75 transposed
Lsi01g00857 Lsi-Chr1:6862407 Lsi04g01446 Lsi-Chr4:22211213 4.60E-68 wgd
Lsi01g00857 Lsi-Chr1:6862407 Lsi05g00810 Lsi-Chr5:12236738 3.77E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24622 PF00046 Homeodomain 4.80E-16 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00857 K09338 - csv:101218782 466.848