Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00869 ATGAAGGGTAGAGGGAATTCCATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTGAACATGGAGCTTTCTTCTTCCTCTGCCACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCTTCTCAGTTTAACTATGGCATTTGCTATGGTGTTGAGGGAGAACATGGTGGCTTTTATTCACCATTGTCTGCCATGCCACTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCACTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGAAGCCGTGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAACACCCAGCAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGCTCCTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAGCCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGTCTTCCTCTTCTTCTTTCTCTAAATTTCTTACTTCACTATTCTTTCTTTTCTTTAATCTGCATTATGTGGGGGGAGCTACTTTGTTTTGTTTTGCTTTTCTTCATGTTCATTCCATGATTCAATGTTTCATTATGTCAATCAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGTAAAAAAAAATCCCCCCATCCCCACCAAAAAGGAAGTAAAAACAAACAAAAAAAGAACATTATGGTGCTTCTGTTTCTTCCATGGATCCACATTTTGTTGTTTCTTTTTGTTCTTGCTAAAATCATAACACACTCAATTGGTTTTATTTCTTTTTTTTTTTTTGGGCTGGGATCGCCATTGGATTCAAATGATGATGTCCAGTGTACCTTGTGGTTCCAAAAATTGGTTTTTTTAGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTTCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGACAAGAATATGTCGCTCACCTGAGAAGGCAAGCTCATTTTTACCATGTAAGAAGCAGCGGGTTCTCGAGAGGGGCCTCCATATACAGAGGCGTAACAAGGTCCAATAAGTCTCAACTCAAAACTTTCGAATCTCTGTCTGAAGTTTCTCTGTTCCCATTTGTATTATATTGCAGACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCCTATGACATAGCAGCCATAAAATTTCGGGGAATGAACGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGTGATCTAGCTAAGAGAAAGCAGCAGCCAGAATTTGACAATGAATCACTTAGACAAAGCCCTCCTACTCACAACAGCCATTCAGAAGCAATGCCTCTGCCTTCACAGAGTAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTCTATCAGTCATCACAGCAGCTCATTCCGAAACAACGAATGTTGTCTGCAATAAACGATGATGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACAAGCTGCAGCTTGAGCAGCTCAAGGGAGGAAAGTCCAGACAAAACAAGCCTTTCGATGGTGTTCGGAATGCCTCAATCAACATCTAAGCCGTTTGCTGCCACGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACCGATACTTAA 2361 43.5 MKGRGNSMNNVNGNNCNWLGFSVSPNVNMELSSSSATTVSPSIPANLFHSPSQFNYGICYGVEGEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSTTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQHPAVAQSDISGMKNWAVPRNYAATNNGSFEQKMVSCMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRSSSSSFSKFLTSLFFLFFNLHYVGGATLFCFAFLHVHSMIQCFIMSIRHRWTGRYEAHLWDNSCKKEGQSRKGRQGKKKSPHPHQKGSKNKQKKNIMVLLFLPWIHILLFLFVLAKIITHSIGFISFFFFGLGSPLDSNDDVQCTLWFQKLVFLGGYDMEEKAARAYDLAALKYWGPSTHINFSLENYQKELEEMKNMSRQEYVAHLRRQAHFYHVRSSGFSRGASIYRGVTRSNKSQLKTFESLSEVSLFPFVLYCRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSHSEAMPLPSQSSSQSESDWKMALYQSSQQLIPKQRMLSAINDDGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAATASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7000981 7004821 - Lsi01G008690.1 Lsi01g00869 653527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00869 786 MobiDBLite consensus disorder prediction 634 674 - -
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 303 - -
Lsi01g00869 786 SUPERFAMILY DNA-binding domain 452 488 IPR016177 GO:0003677
Lsi01g00869 786 MobiDBLite consensus disorder prediction 369 394 - -
Lsi01g00869 786 CDD AP2 529 615 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 Coils Coil 488 508 - -
Lsi01g00869 786 ProSiteProfiles AP2/ERF domain profile. 530 613 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 Pfam AP2 domain 561 605 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 560 784 - -
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 560 784 - -
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 455 538 - -
Lsi01g00869 786 SMART rav1_2 351 493 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 SMART rav1_2 561 619 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 MobiDBLite consensus disorder prediction 644 674 - -
Lsi01g00869 786 Gene3D AP2/ERF domain 559 615 IPR036955 GO:0003700|GO:0006355
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 350 378 - -
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 303 - -
Lsi01g00869 786 SUPERFAMILY DNA-binding domain 561 614 IPR016177 GO:0003677
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 350 378 - -
Lsi01g00869 786 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 455 538 - -
Lsi01g00869 786 ProSiteProfiles AP2/ERF domain profile. 339 487 IPR001471 GO:0003700|GO:0006355
Lsi01g00869 786 MobiDBLite consensus disorder prediction 374 394 - -
Lsi01g00869 786 Gene3D AP2/ERF domain 348 489 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01548 Lsi-Chr8:23543233 Lsi01g00869 Lsi-Chr1:7000981 1.19E-13 dispersed
Lsi02g02647 Lsi-Chr2:32891612 Lsi01g00869 Lsi-Chr1:7000981 7.42E-10 transposed
Lsi03g01559 Lsi-Chr3:26554340 Lsi01g00869 Lsi-Chr1:7000981 7.49E-08 transposed
Lsi04g00187 Lsi-Chr4:2003090 Lsi01g00869 Lsi-Chr1:7000981 5.19E-51 transposed
Lsi05g00782 Lsi-Chr5:11240033 Lsi01g00869 Lsi-Chr1:7000981 1.08E-15 transposed
Lsi06g01084 Lsi-Chr6:21114522 Lsi01g00869 Lsi-Chr1:7000981 8.42E-49 transposed
Lsi06g01180 Lsi-Chr6:22096693 Lsi01g00869 Lsi-Chr1:7000981 5.64E-08 transposed
Lsi07g00616 Lsi-Chr7:6629649 Lsi01g00869 Lsi-Chr1:7000981 3.06E-45 transposed
Lsi10g01048 Lsi-Chr10:14712752 Lsi01g00869 Lsi-Chr1:7000981 1.53E-16 transposed
Lsi11g00935 Lsi-Chr11:13539557 Lsi01g00869 Lsi-Chr1:7000981 1.15E-50 transposed
Lsi01g00869 Lsi-Chr1:7000981 Lsi04g01456 Lsi-Chr4:22324688 3.59E-30 wgd
Lsi01g00869 Lsi-Chr1:7000981 Lsi08g01547 Lsi-Chr8:23533820 5.73E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24624 PF00847 AP2 1.80E-06 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00869 K09285 - csv:101203323 587.415