Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00888 ATGGGTGCGCCGAAGCAGAAATGGACAGCTGAAGAGGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCTGGAAAATGGCGCACAATACTCACAGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTGTGGCCCTAAAACATCATGATAATCCTATGCCTGTAAGCACCGTGCTTCCAAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCCCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGTGCTAATGCATAACACGTTTGAATCCGAATGTTTGACAATTTTATATGTGCAGTAA 504 43.06 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSVALKHHDNPMPVSTVLPNEEIVDAKPLAISNGTIRPNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEVLMHNTFESECLTILYVQ 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7163430 7165606 + Lsi01G008880.1 Lsi01g00888 653546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00888 167 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lsi01g00888 167 Gene3D - 2 59 - -
Lsi01g00888 167 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lsi01g00888 167 SUPERFAMILY Winged helix DNA-binding domain 116 149 IPR036390 -
Lsi01g00888 167 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Lsi01g00888 167 SMART sant 4 59 IPR001005 -
Lsi01g00888 167 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 149 - -
Lsi01g00888 167 CDD SANT_TRF 6 57 - -
Lsi01g00888 167 PANTHER SINGLE MYB HISTONE 4 1 149 IPR044597 GO:0003691
Lsi01g00888 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00888 K09422 MYBP; transcription factor MYB, plant - csv:101202913 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00888 Lsi-Chr1:7163430 Lsi03g01014 Lsi-Chr3:19524894 3.50E-45 dispersed
Lsi01g00888 Lsi-Chr1:7163430 Lsi07g00592 Lsi-Chr7:6285937 4.10E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01014 . 1 372 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 3.5e-66 248.8
Lsi01g00888 . 1 153 Single Myb Histone (SMH) Gene Family AT1G49950 55.1 3.4e-37 152.5
Lsi01g00888 . 1 149 Single Myb Histone (SMH) Gene Family AT5G67580 57.2 3.3e-40 162.5
Lsi01g00888 . 1 149 Single Myb Histone (SMH) Gene Family AT3G49850 54.0 4.4e-37 152.1
Lsi07g00592 . 1 271 Single Myb Histone (SMH) Gene Family AT1G17520 52.1 8.0e-68 254.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24628 PF00249 Myb_DNA-binding 1.20E-08 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00888 Lsi_Chr01 FPKM 8.388668 9.494007 9.607345 9.276775 9.381165 9.285853 9.209256 8.800399 8.486651 9.052314