Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00888 ATGGGTGCGCCGAAGCAGAAATGGACAGCTGAAGAGGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCTGGAAAATGGCGCACAATACTCACAGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTGTGGCCCTAAAACATCATGATAATCCTATGCCTGTAAGCACCGTGCTTCCAAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCCCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGTGCTAATGCATAACACGTTTGAATCCGAATGTTTGACAATTTTATATGTGCAGTAA 504 43.06 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSVALKHHDNPMPVSTVLPNEEIVDAKPLAISNGTIRPNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEVLMHNTFESECLTILYVQ 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7163430 7165606 + Lsi01G008880.1 Lsi01g00888 653546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00888 167 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lsi01g00888 167 Gene3D - 2 59 - -
Lsi01g00888 167 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lsi01g00888 167 SUPERFAMILY Winged helix DNA-binding domain 116 149 IPR036390 -
Lsi01g00888 167 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Lsi01g00888 167 SMART sant 4 59 IPR001005 -
Lsi01g00888 167 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 149 - -
Lsi01g00888 167 CDD SANT_TRF 6 57 - -
Lsi01g00888 167 PANTHER SINGLE MYB HISTONE 4 1 149 IPR044597 GO:0003691
Lsi01g00888 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00888 Lsi-Chr1:7163430 Lsi03g01014 Lsi-Chr3:19524894 3.50E-45 dispersed
Lsi01g00888 Lsi-Chr1:7163430 Lsi07g00592 Lsi-Chr7:6285937 4.10E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24628 PF00249 Myb_DNA-binding 1.20E-08 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00888 K09422 - csv:101202913 288.885