Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00892 | ATGGAAAGGTTTTTGGAGGAGAATTTTGGTGGCGTCAAACCTAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTTGTCAAGAATCCCAAAAGGAGGTTTCGATTCACCGCTAATCTCTCTAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAATAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATTCAAGGTGTGCAACCAAGTGACTATACTGTTCCGGAGGAAGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTTGGGTCTATTGTTGAAGGCCATGATCCAAAGAAGTTTAAATATCATGGTGGGGTTGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAAATGGGCTTAATGGTGATGCTGATGCATTCAACCATAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGCGAACAGAGGAGTTTCTTGGTGTTTGTTTGGGAAGCACTTCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTCGTCTCTTTGGTGGTTGGGATAATAACAGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCTAGTATCTTATTGGTTGTGTTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGGTTATAGACAGAAAATGTCGATCTACGATTTACTTCCTGGAGATATTGTGCACCTGTCTATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTAATGGTGAGTGCAGAAAATCCTTATCTTCTGTCTGGGACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACCGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGGGTGGCAACAATTATTGGGAAAATTGGTCTTTTCTTTGCCATCATCACTTTTGCTGTGTTAGTTCAAGGATTGCTTAGACGTAAAATCCGAGAAGGGACTCACTGGAGCTGGTCTGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACGTTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCACTTGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGATAAAACTGGAACAATCACCACAAATCACATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCATGTAATAATGCATCAGGCTTCTCTTCTGACCTTCCAGCCTCTGTTATCAAACTTCTGCTGCAATCAATATTCAACAACACTGGAGGAGAAGTTGTAATCAACAAAGATGGCAAGCGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATCAAAGTTGAGCCGTTCAACTCTCTGAAAAAGCGGATGGGTGTTGTCCTAGAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGGGCTTCGGAAATAGTATTGGCTGCCTGTGACAAGGTGGTCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCCTCCATCAAGCACCTCAATGTTATTATCGATCAATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATTCTATTCCAGTTTCTGGTTATACCTGTATAGGTATCGTGGGTATTAAAGATCCTGTTCGTCCGGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTTACCGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAATTGCTTCAAATTATTCCCAAAATTCAGGTGATGGCTCGTTCTTCACCTCTAGATAAGCACACTCTGGTCAAGCAATTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAACGATGCTCCTGCACTCCACGAAGCAGATATTGGATTAGCAATGGGCATCGCCGGAACTGAGGTTGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAACATTCAAAAATTTGTGCAATTCCAGCTGACTGTTAACATAGTGGCTTTGATCGTAAACTTCTCTTCAGCTTGTTTGACAGGTAATGCTCCTCTTACTGCAGTCCAGCTCTTGTGGGTAAACATGATTATGGATACACTTGGAGCGCTGGCTCTCGCCACTGAGCCTCCAACTGATGACTTGATGAAGCGGTTACCTGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCATGGGCCAGTCCTTGTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGGAAATCAGCATTCGATCTTGACGGCCCTGATTCAGATCTGAAACTGAATACACTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTTAACGAAATAAGTTCGAGGGAGATGGACAAAATCAATGTGTTGAAAGGCATACTTAATAACTATGTGTTTGTTGCTGTCATTGGTTCTACCATCATCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCAAGCACAACCCCTCTGAATATGTCGCAGTGGCTCTTCAGCGTGGTGATTGGATTCCTAGGCATGCCAATTGCTGCTTTCTTGAAGATGATTGCAGTATGA | 3045 | 43.22 | MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSIVEGHDPKKFKYHGGVEGIAQKLCTSTTNGLNGDADAFNHRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLLRRKIREGTHWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNHMTVVKSCICMNVKESCNNASGFSSDLPASVIKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLEFPEGGFRAHTKGASEIVLAACDKVVNSSGEVVPLDEASIKHLNVIIDQFAGEALRTLCLAYMELENGFSVNDSIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLQIIPKIQVMARSSPLDKHTLVKQLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRRGSFISNVMWRNIMGQSLYQFSVIWFLQAKGKSAFDLDGPDSDLKLNTLIFNSFVFCQIFNEISSREMDKINVLKGILNNYVFVAVIGSTIIFQIIIIEFLGTFASTTPLNMSQWLFSVVIGFLGMPIAAFLKMIAV | 1014 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7182041 | 7187417 | - | Lsi01G008920.1 | Lsi01g00892 | 653550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00892 | 1014 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 886 | - | - | |
Lsi01g00892 | 1014 | Pfam | E1-E2 ATPase | 237 | 431 | - | - | |
Lsi01g00892 | 1014 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 116 | 1012 | IPR023298 | - | |
Lsi01g00892 | 1014 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 205 | 376 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 393 | 475 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 720 | 834 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | Pfam | Cation transport ATPase (P-type) | 513 | 591 | - | - | |
Lsi01g00892 | 1014 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 333 | IPR008250 | - | |
Lsi01g00892 | 1014 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 49 | IPR024750 | GO:0005516 | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 661 | - | - | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 453 | 467 | - | - | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 682 | - | - | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 284 | 298 | - | - | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 789 | - | - | |
Lsi01g00892 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 753 | 772 | - | - | |
Lsi01g00892 | 1014 | Gene3D | - | 140 | 336 | - | - | |
Lsi01g00892 | 1014 | SFLD | p-type atpase | 435 | 805 | IPR044492 | - | |
Lsi01g00892 | 1014 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 459 | 662 | IPR023299 | GO:0000166 | |
Lsi01g00892 | 1014 | Pfam | Cation transporting ATPase, C-terminus | 838 | 1012 | IPR006068 | - | |
Lsi01g00892 | 1014 | SFLD | Haloacid Dehalogenase | 435 | 805 | - | - | |
Lsi01g00892 | 1014 | PANTHER | CALCIUM-TRANSPORTING ATPASE 1 | 5 | 1013 | - | - | |
Lsi01g00892 | 1014 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 455 | 461 | IPR018303 | - | |
Lsi01g00892 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 753 | 769 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 785 | 810 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 609 | 627 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi01g00892 | 1014 | Gene3D | - | 17 | 77 | - | - | |
Lsi01g00892 | 1014 | SUPERFAMILY | HAD-like | 452 | 858 | IPR036412 | - | |
Lsi01g00892 | 1014 | SMART | Cation_ATPase_N_a_2 | 114 | 190 | IPR004014 | - | |
Lsi01g00892 | 1014 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 113 | 1013 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Lsi01g00892 | 1014 | PANTHER | CATION TRANSPORTING ATPASE | 5 | 1013 | - | - | |
Lsi01g00892 | 1014 | Pfam | Cation transporter/ATPase, N-terminus | 116 | 185 | IPR004014 | - | |
Lsi01g00892 | 1014 | Gene3D | - | 168 | 1012 | - | - | |
Lsi01g00892 | 1014 | Gene3D | - | 450 | 798 | IPR023214 | - | |
Lsi01g00892 | 1014 | Gene3D | - | 463 | 657 | IPR023299 | GO:0000166 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00892 | Lsi-Chr1:7182041 | Lsi09g00868 | Lsi-Chr9:10096639 | 0 | dispersed | |
Lsi11g00488 | Lsi-Chr11:5147209 | Lsi01g00892 | Lsi-Chr1:7182041 | 2.00E-17 | dispersed | |
Lsi02g02841 | Lsi-Chr2:34592620 | Lsi01g00892 | Lsi-Chr1:7182041 | 0 | transposed | |
Lsi03g01551 | Lsi-Chr3:26477706 | Lsi01g00892 | Lsi-Chr1:7182041 | 0 | transposed | |
Lsi01g00892 | Lsi-Chr1:7182041 | Lsi04g01488 | Lsi-Chr4:22556570 | 0 | wgd | |
Lsi01g00892 | Lsi-Chr1:7182041 | Lsi08g01538 | Lsi-Chr8:23393219 | 1.05E-81 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00892 | K01537 | - | csv:101212315 | 1890.55 |