Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00892 ATGGAAAGGTTTTTGGAGGAGAATTTTGGTGGCGTCAAACCTAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTTGTCAAGAATCCCAAAAGGAGGTTTCGATTCACCGCTAATCTCTCTAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAATAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATTCAAGGTGTGCAACCAAGTGACTATACTGTTCCGGAGGAAGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTTGGGTCTATTGTTGAAGGCCATGATCCAAAGAAGTTTAAATATCATGGTGGGGTTGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAAATGGGCTTAATGGTGATGCTGATGCATTCAACCATAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGCGAACAGAGGAGTTTCTTGGTGTTTGTTTGGGAAGCACTTCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTCGTCTCTTTGGTGGTTGGGATAATAACAGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCTAGTATCTTATTGGTTGTGTTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGGTTATAGACAGAAAATGTCGATCTACGATTTACTTCCTGGAGATATTGTGCACCTGTCTATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTAATGGTGAGTGCAGAAAATCCTTATCTTCTGTCTGGGACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACCGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGGGTGGCAACAATTATTGGGAAAATTGGTCTTTTCTTTGCCATCATCACTTTTGCTGTGTTAGTTCAAGGATTGCTTAGACGTAAAATCCGAGAAGGGACTCACTGGAGCTGGTCTGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACGTTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCACTTGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGATAAAACTGGAACAATCACCACAAATCACATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCATGTAATAATGCATCAGGCTTCTCTTCTGACCTTCCAGCCTCTGTTATCAAACTTCTGCTGCAATCAATATTCAACAACACTGGAGGAGAAGTTGTAATCAACAAAGATGGCAAGCGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATCAAAGTTGAGCCGTTCAACTCTCTGAAAAAGCGGATGGGTGTTGTCCTAGAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGGGCTTCGGAAATAGTATTGGCTGCCTGTGACAAGGTGGTCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCCTCCATCAAGCACCTCAATGTTATTATCGATCAATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATTCTATTCCAGTTTCTGGTTATACCTGTATAGGTATCGTGGGTATTAAAGATCCTGTTCGTCCGGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTTACCGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAATTGCTTCAAATTATTCCCAAAATTCAGGTGATGGCTCGTTCTTCACCTCTAGATAAGCACACTCTGGTCAAGCAATTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAACGATGCTCCTGCACTCCACGAAGCAGATATTGGATTAGCAATGGGCATCGCCGGAACTGAGGTTGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAACATTCAAAAATTTGTGCAATTCCAGCTGACTGTTAACATAGTGGCTTTGATCGTAAACTTCTCTTCAGCTTGTTTGACAGGTAATGCTCCTCTTACTGCAGTCCAGCTCTTGTGGGTAAACATGATTATGGATACACTTGGAGCGCTGGCTCTCGCCACTGAGCCTCCAACTGATGACTTGATGAAGCGGTTACCTGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCATGGGCCAGTCCTTGTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGGAAATCAGCATTCGATCTTGACGGCCCTGATTCAGATCTGAAACTGAATACACTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTTAACGAAATAAGTTCGAGGGAGATGGACAAAATCAATGTGTTGAAAGGCATACTTAATAACTATGTGTTTGTTGCTGTCATTGGTTCTACCATCATCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCAAGCACAACCCCTCTGAATATGTCGCAGTGGCTCTTCAGCGTGGTGATTGGATTCCTAGGCATGCCAATTGCTGCTTTCTTGAAGATGATTGCAGTATGA 3045 43.22 MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSIVEGHDPKKFKYHGGVEGIAQKLCTSTTNGLNGDADAFNHRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLLRRKIREGTHWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNHMTVVKSCICMNVKESCNNASGFSSDLPASVIKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLEFPEGGFRAHTKGASEIVLAACDKVVNSSGEVVPLDEASIKHLNVIIDQFAGEALRTLCLAYMELENGFSVNDSIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLQIIPKIQVMARSSPLDKHTLVKQLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRLPVGRRGSFISNVMWRNIMGQSLYQFSVIWFLQAKGKSAFDLDGPDSDLKLNTLIFNSFVFCQIFNEISSREMDKINVLKGILNNYVFVAVIGSTIIFQIIIIEFLGTFASTTPLNMSQWLFSVVIGFLGMPIAAFLKMIAV 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7182041 7187417 - Lsi01G008920.1 Lsi01g00892 653550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00892 1014 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Lsi01g00892 1014 Pfam E1-E2 ATPase 237 431 - -
Lsi01g00892 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1012 IPR023298 -
Lsi01g00892 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 205 376 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 393 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Lsi01g00892 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Lsi01g00892 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Lsi01g00892 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Lsi01g00892 1014 Gene3D - 140 336 - -
Lsi01g00892 1014 SFLD p-type atpase 435 805 IPR044492 -
Lsi01g00892 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Lsi01g00892 1014 Pfam Cation transporting ATPase, C-terminus 838 1012 IPR006068 -
Lsi01g00892 1014 SFLD Haloacid Dehalogenase 435 805 - -
Lsi01g00892 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 1013 - -
Lsi01g00892 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Lsi01g00892 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi01g00892 1014 Gene3D - 17 77 - -
Lsi01g00892 1014 SUPERFAMILY HAD-like 452 858 IPR036412 -
Lsi01g00892 1014 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Lsi01g00892 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 113 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi01g00892 1014 PANTHER CATION TRANSPORTING ATPASE 5 1013 - -
Lsi01g00892 1014 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Lsi01g00892 1014 Gene3D - 168 1012 - -
Lsi01g00892 1014 Gene3D - 450 798 IPR023214 -
Lsi01g00892 1014 Gene3D - 463 657 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00892 Lsi-Chr1:7182041 Lsi09g00868 Lsi-Chr9:10096639 0 dispersed
Lsi11g00488 Lsi-Chr11:5147209 Lsi01g00892 Lsi-Chr1:7182041 2.00E-17 dispersed
Lsi02g02841 Lsi-Chr2:34592620 Lsi01g00892 Lsi-Chr1:7182041 0 transposed
Lsi03g01551 Lsi-Chr3:26477706 Lsi01g00892 Lsi-Chr1:7182041 0 transposed
Lsi01g00892 Lsi-Chr1:7182041 Lsi04g01488 Lsi-Chr4:22556570 0 wgd
Lsi01g00892 Lsi-Chr1:7182041 Lsi08g01538 Lsi-Chr8:23393219 1.05E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00892 K01537 - csv:101212315 1890.55