Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00896 ATGGTCTACGCTAAACAAATCAAGCAATTCTTGCAAGGCGCATTCACAATCGTTATCGTGTTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGTGGATTCCATTTTCAAGTGACAGCTGAGCCTCTCTCACGCACCCTGCCTTTGCTTTCCACATCCTCTTTCTGTCTTGCCACTGCCATATCAGAGCAGAATTACAGGTGGATGCACACCCATTGTTTACGAAACTACCTCCGCCACCTCCTCCGACTGACCTCTTTCAACGCTCTTTTCAATTTCAATCTTGTTCTTGAGCGAGGCTTTAGGAGGAGTTGCGAATCTCTCTTTGAAACTACTATTCGGTGTTTCCTGATTCATTTTTCTGTTTTTTTTGTTGATCTTTGGCATGCTGCTTCGTTGTTCAGTTCCGAGATGGTCACGTTGCAATCGGTGCGACCGCTGGTTCGCATGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACTGGAGCGGAGTTGTGGAGCTTGGGGGTTTTGTTGCGATGCTGTTGCTACTAGTTTCTTACGGCCATTTAAAGCGGCGAAGAGCAATTGCTCTGCGATTCACGGTACTTATGTTGGAAAATCGCGTTGTATTCTTTTTATTCAGACTGTTGCATCGAAGAATTTGTGCCCTAGAAGAAAGGTAAATCACAAAATCACGAGTTTGGTCATGGTTCCGAACGCATTGAAAATAGCTCTAGCTTATCGTAAAGGTTGCCATGAGACCTCAACTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGAAGCCTGTAAGACTTACTTCACTGACCAGATTTGCAGGACCGATCACCCGTCTCTTTATGATTGCCCATCTGCAATTTGGATTGATATTATCCTTTTGATGCACAGAGTCTACAATTACTCTCTCTCTCTTTCTCTCTCTCACACACCTAGGGCTCTAATTATAGGAAAAAGCACTTTGGCATGTGCATTAAGTCAAGGCTTACATTCAAGAAGAAAACTGACCTACATCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGCACCCGAAGATCGTGCAGAAAACATACGGAGAATTGGTGGGTGTCCTTTTCTATCTGATGAAAAATTTTCATTGACACGATCTATAGGTGAGGTAGCAAGCCTCTTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGTCGTGCCTTGCTGGCAGAAGGTGATTTTATTGAGGTTTTCCTTGATGTACCACTTAATGTATGTGAAGCCCGGGATCCAAAGGGTCTGTATAAACTGTCTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCTGAGATCGTGTTGCAATACAAAGAAGGGATATGCTCGTCCCCTATTGACATGGCGGAAAGAGTGATTTCATATTTAGAAGAGAGAGGGAGGAAACGAAATTACTCCTCTTATTTCTCACTGCTAGGAAACATCTCGTTTCCTTCAGTCTCTGCTTTCCAATTCTTGGGTCATTTAGCATTCTTCTTACGAATAAGAACTATAGTAACGACATGTCGACAAAAGGTCAGCTTCGGTAACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGCCCTAATTGCAGAGATTCGCCAGCTTCCGAGTTCGAAGCTCAAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCAATTGTTACTTCATTTTAATGGCAGGCTTACATTTACACCCTTCGAGTACCCTGTATGTACCGCCGATGGCAGCGTGTTCGAGATAATGAATATCATCCCTTATATTCGAAAATATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGTTGATATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTACTGCGCTTGATAGTAAAGTTCTCCTGGATTTTGATCATGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAAGGAAGGGAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGAGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGGAGAATGCTAAAGGAGAGGAGAAACCAACGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTACATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGTGAGAATTTCATCACACTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAACTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGTTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAACGATCAGCCTCTGGAGGAGATCAAGATAACAAGCGTCACCGTTTTTGTGAATCCATACTCAGAACCCGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGGTCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGACGGAGCTGCTGGTGGCGGTGTAGGGAAATATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCTGCTGTTGATGGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCATGGTAA 3663 43.11 MVYAKQIKQFLQGAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPLSRTLPLLSTSSFCLATAISEQNYRWMHTHCLRNYLRHLLRLTSFNALFNFNLVLERGFRRSCESLFETTIRCFLIHFSVFFVDLWHAASLFSSEMVTLQSVRPLVRMYEYRPLISPSLGRLKPANVAVNNAIGLERSCGAWGFCCDAVATSFLRPFKAAKSNCSAIHGTYVGKSRCILFIQTVASKNLCPRRKVNHKITSLVMVPNALKIALAYRKGCHETSTGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSEACKTYFTDQICRTDHPSLYDCPSAIWIDIILLMHRVYNYSLSLSLSHTPRALIIGKSTLACALSQGLHSRRKLTYILDGDNIRHGLNSDLSFAPEDRAENIRRIGGCPFLSDEKFSLTRSIGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLNVCEARDPKGLYKLSRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGICSSPIDMAERVISYLEERGRKRNYSSYFSLLGNISFPSVSAFQFLGHLAFFLRIRTIVTTCRQKVSFGNLVWILSWCGRRSPNCRDSPASEFEAQRGKGRWGRNSTVKTVCLLRKLNGPPNGVAPNPRTLKPLSNGFLSIAAQLLLHFNGRLTFTPFEYPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLIFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRETALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDQPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDGSLKQTTSTKKRTAAGEFKDFSSW 1220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7212493 7224190 + Lsi01G008960.1 Lsi01g00896 653554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00896 1220 Pfam Adenylylsulphate kinase 416 517 - -
Lsi01g00896 1220 Pfam Adenylylsulphate kinase 361 411 - -
Lsi01g00896 1220 SUPERFAMILY Cyclophilin-like 978 1144 IPR029000 -
Lsi01g00896 1220 SUPERFAMILY RING/U-box 671 732 - -
Lsi01g00896 1220 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 672 1218 IPR044666 -
Lsi01g00896 1220 MobiDBLite consensus disorder prediction 1136 1158 - -
Lsi01g00896 1220 Gene3D - 270 541 IPR027417 -
Lsi01g00896 1220 SMART Ubox_2 667 729 IPR003613 GO:0004842|GO:0016567
Lsi01g00896 1220 MobiDBLite consensus disorder prediction 1194 1208 - -
Lsi01g00896 1220 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 982 1129 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 538 IPR027417 -
Lsi01g00896 1220 CDD APSK 361 514 IPR002891 GO:0000103|GO:0004020|GO:0005524
Lsi01g00896 1220 CDD cyclophilin_RING 978 1136 - -
Lsi01g00896 1220 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 1013 1030 IPR020892 GO:0003755|GO:0006457
Lsi01g00896 1220 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 978 1129 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 723 IPR013083 -
Lsi01g00896 1220 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1061 1076 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1018 1030 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 992 1007 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1076 1088 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1089 1104 IPR002130 GO:0000413|GO:0003755
Lsi01g00896 1220 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 672 1218 - -
Lsi01g00896 1220 MobiDBLite consensus disorder prediction 1132 1220 - -
Lsi01g00896 1220 CDD RING-Ubox_PPIL2 672 738 IPR026951 -
Lsi01g00896 1220 Coils Coil 1136 1156 - -
Lsi01g00896 1220 ProSiteProfiles U-box domain profile. 663 736 IPR003613 GO:0004842|GO:0016567
Lsi01g00896 1220 Gene3D - 958 1143 IPR029000 -
Lsi01g00896 1220 TIGRFAM apsK: adenylyl-sulfate kinase 361 516 IPR002891 GO:0000103|GO:0004020|GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00896 Lsi-Chr1:7212493 Lsi03g01016 Lsi-Chr3:19567621 3.23E-79 dispersed
Lsi05g01974 Lsi-Chr5:26855016 Lsi01g00896 Lsi-Chr1:7212493 9.58E-18 dispersed
Lsi11g01616 Lsi-Chr11:24488651 Lsi01g00896 Lsi-Chr1:7212493 4.39E-31 dispersed
Lsi01g00896 Lsi-Chr1:7212493 Lsi11g01025 Lsi-Chr11:17432350 2.67E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00896 K10598 - csv:101204462 977.237