Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00897 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAACAATCTTACAATTCCAGTAGAACTAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATTACCATCAACAGGAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATCCATACCATCCTCACCCACCTTCTACTGCTACCCCAACCACCGCCACCGCCTCCACCACTCCAACTCCGATCGATCAATTCTCATTTGTTTCCCCTTCTCCAGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCTGATATTCTCCTTGAAACCGCCAGGGCTATTTCTGACAGGAACAGCGCCCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCTCCCTATGGAGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCCTTGTTTAGTCGTATGACAGATTCCGGCGACCGTAATTACCGGGCTTTGGCCTCCGCTTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAGGCCTTAGAAGGCGAATCGAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAATGGCCCACTTTGCTTGAAGCTCTTGCAACTCGCACCGACGACACGCCGCACCTCCGCCTCACCACGGTCGTTACCACCAAGCCCAGCGGTGGGACCGGAGTAGCCGCGTCTCAAAAAGTAATGAAAGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTGTACCATTCTGGTGACCTTTCGGAATTGGACTTAGCCAAATTAGACATTAAAGAAGACGAAGCACTTGCCGTTAACTGCGTCGGAGCCTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGACCGCGGATAATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTTGGCGTCGATGGTATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTATTTCGAGACATTGGACGAGAGTTTCTCGAGGACGAGCAACGAGCGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGCTCGGCGGCGGACTCGGTGGAGAGGCGGGAATCGGCGGCGCGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGTCCGGTGACGTTCAGCGATGAAGTGTGCGACGACGTTAGGGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCACCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1479 49.97 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHYHQQEDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATPTTATASTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLAKLDIKEDEALAVNCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAADSVERRESAARWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEHPVVWASAWRP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7231061 7232539 + Lsi01G008970.1 Lsi01g00897 653555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00897 492 PANTHER PROTEIN SHORT-ROOT 1 491 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Lsi01g00897 492 Pfam GRAS domain family 113 491 IPR005202 -
Lsi01g00897 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 491 IPR005202 -
Lsi01g00897 492 MobiDBLite consensus disorder prediction 14 38 - -
Lsi01g00897 492 MobiDBLite consensus disorder prediction 14 33 - -
Lsi01g00897 492 MobiDBLite consensus disorder prediction 56 91 - -
Lsi01g00897 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00897 Lsi-Chr1:7231061 Lsi10g00554 Lsi-Chr10:8093732 4.16E-178 dispersed
Lsi02g02902 Lsi-Chr2:35244960 Lsi01g00897 Lsi-Chr1:7231061 4.16E-38 dispersed
Lsi01g00897 Lsi-Chr1:7231061 Lsi10g00057 Lsi-Chr10:977937 3.24E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24630 PF03514 GRAS 8.60E-105 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00897 - - csv:101204711 887.871