Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00909 ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTTGTCGCTAAGTTCTTCGGCCGCGCCGGCCTTATGTCCTTCATCTCCGCCGTACCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACTGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGAAACTGGCACGTTTGTCAGGCCGCTGTCGACACCGTCTTACGAGGCGGCACGTTGCGGCCGATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTGGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCCCGATCCAGGCTCTCGCCGAAACGCAAACGATCCGAGGAATCATCCACCAAGCACCAACTGAACGACCTAGATCTCCGCTTGACGCCCACGTTCCCAGGAAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACATGCTTCGAGAGCGGCCTTGGGGATCATAATAATCATCAACATCACTATTATCCAGAAGAAGGAGCCGCCCAACGGAAGCTTCTCAATTTGTTCGTCTAA 711 53.73 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSTKHQLNDLDLRLTPTFPGKSTLRAATPSMNSEESETTTCFESGLGDHNNHQHHYYPEEGAAQRKLLNLFV 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7333830 7335120 + Lsi01G009090.1 Lsi01g00909 653567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00909 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
Lsi01g00909 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Lsi01g00909 236 MobiDBLite consensus disorder prediction 156 171 - -
Lsi01g00909 236 MobiDBLite consensus disorder prediction 146 209 - -
Lsi01g00909 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lsi01g00909 236 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lsi01g00909 236 MobiDBLite consensus disorder prediction 185 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00909 Lsi-Chr1:7333830 Lsi05g00382 Lsi-Chr5:4824488 5.22E-55 dispersed
Lsi01g00909 Lsi-Chr1:7333830 Lsi04g01494 Lsi-Chr4:22637568 7.51E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24633 PF03195 LOB 4.00E-25 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00909 - - bhj:120072665 432.18