Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00910 ATGATGCAATTCAGTGAGACACCACCCCCACGGTTGCATCAAACCACCACCACCACTACTACTACTACTACAAGGATTGTTCCTTCTTCATTTCCAGATATGTCAATGAATAATAAAAATCAAATTACGACGACGGGCCAATTTCGAAATAGGCGGCCATGGTCTGGATTATTCCCTTGTTCATCCAAGGCTTTAGGGACTTGCTTGGGATATGCCAATTGTATGGAACAATTGTTAGTTCATTGTGCCAACGCCATTGAATCCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGTCTCACTTCCGCCTTCCTACGCGCTCTCGTCACACGCGCCACCAATACCGGCAACTGCAAGATCCTAGCCGCTATCACCACAGCATTCTCCTCCTCACTCACCACTCACACCTTCTCCCTTATGGACCTCGCCGCCTTCGTTGACTTAACCCCTTGGCACCGCTTCGGCTTCACTGCCGCTAATGTCGCCATTCTCGACGCCATCGATGGTTACTCCGCCGTACACGTCGTGGATTTCAGCTTGATGCATTGCATGCAAATCCCTACTTTAATCGATGCCATTGCTACACGATTTGAGGTCCCTCCATTACTGAAACTCACGACTGTAGCTGTTGTTGCTGTTAAAGACGCGTCGCCTATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTAGTGAATTTCGCCAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCCTCTTGCCATACAGACGGTTTTGCCAGTTTAATTGAACAAATCAGAATGCAGCATTTAATTTACGGACCCGAAAATAACGAAGCACTCGTTTTTAATTGTCATATGATGCTTCATTACATCCCTGAAGAAACATTAAACCCAAACCCAAACCCAAACCCATCTCCCAATTTCGACATGTCGTCCACTTCAATTCGTTCCATGTTTCTCAAGGCAATCCGTAGCTTAGATCCAACAATTGTCGTTTTAGTAGACGAAGATGCGGATTTCACTTCAAGCAAATTGGTTACTCGATTGAGATCGGCGTTTAATTACCTCTGGATTCCTTACGACTCCATGGATTCGTTTCTGCCGAGAAGCAGCAAGCAGAGAGAATGGTATGAAGCCGACATTTGTTGGAAGATTGAGAATATAATTGCACACGAAGGGATTCAACGAGTTCAAAGATTGGAACCGAAGGGACGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGATTCCGTTTGGAGACGACGCCGTTACGGAGGTGAAGACGATGCTTGACGAGCATGCAGCGGGATGGGGGTTGAAGAAAGAAGAGGACCACCTGGTGCTCACGTGGAAAGGGCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTTCTAA 1437 47.18 MMQFSETPPPRLHQTTTTTTTTTTRIVPSSFPDMSMNNKNQITTTGQFRNRRPWSGLFPCSSKALGTCLGYANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNCKILAAITTAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANVAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKDASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFASLIEQIRMQHLIYGPENNEALVFNCHMMLHYIPEETLNPNPNPNPSPNFDMSSTSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENIIAHEGIQRVQRLEPKGRWVQRMVNAKFRGIPFGDDAVTEVKTMLDEHAAGWGLKKEEDHLVLTWKGHDVVFATAWVPF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7355238 7356674 + Lsi01G009100.1 Lsi01g00910 653568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00910 478 Pfam GRAS domain family 75 475 IPR005202 -
Lsi01g00910 478 MobiDBLite consensus disorder prediction 1 22 - -
Lsi01g00910 478 PANTHER SCARECROW-LIKE PROTEIN 32 46 476 - -
Lsi01g00910 478 ProSiteProfiles GRAS family profile. 66 476 IPR005202 -
Lsi01g00910 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 476 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00910 Lsi-Chr1:7355238 Lsi11g01489 Lsi-Chr11:23385384 1.57E-118 dispersed
Lsi01g00910 Lsi-Chr1:7355238 Lsi10g00057 Lsi-Chr10:977937 4.88E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24634 PF03514 GRAS 3.80E-91 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00910 - - csv:101213756 838.565