Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00911 ATGGGTCGCTTCAATCTCCTTATTGCACTCTCTCTTCTTTCTCTCTTCTTCGTTCCTTCCCCAACACTCGCCCAACTCCGACAAAACTTCTACGCCAATATCTGCCCCAATGTCGAAAACATTGTCCGCTCCGAAGTTAACAAAAAATTTCAACAAACTTTCGTCACTGTTCCCGCCACTCTCCGCCTCTTCTTCCACGATTGCTTTGTTCAGGGATGTGATGCCTCTGTAATTATTGCTTCCACCGCATCCAACAAGGCCGAGAAGGACCATCCCGATAACCTCTCACTCGCCGGCGATGGATTCGACACCGTCATCAAAGCGAAAGCCGCCCTCGACGCCATCCCTCAATGCCGAAACAGAGTCTCCTGTGCCGATATTCTCGCTTTAGCCACTCGTGACGTCATCGCATTGTCTGGTGGACCGTCGTACGCGGTGGAGCTGGGAAGATTAGACGGCCTGGTTTCTAGAGCCTCCGACGTGAACGGGAGACTCCCAGCACCGACGTTTAATCTCAATCAGCTTAATTCTCTGTTTGCCGCGAATGGTCTTACACAACAAGACATGATCGCACTCTCAGCGGCTCACACCGTCGGATTCTCCCACTGCGGGAAATTCTCAAATCGAATTTACAGCTTTGCCCCTGGTAGACCAGTGGACCCTACACTAAACAAAACGTATGCAGCCCAGCTACAAGCGATGTGCCCGAAGAATGTGGACCCAAGAGTGGCGATTAACATGGACCCAATCACCCCTAGGGCGTTTGACAACATTTACTTTAGAAATCTACAGCAAGGGATGGGGCTGTTCACGTCGGACCAGGTTCTGTTTAGCGACGCCAGGTCCAGGCCCACTGTGAACGCGTGGGCTAGCAACTCCCAAGCCTTTAATAAAGCATTTATTGAAGCTATGACTAAGTTGGGGCGGGTGGGGGTCAAGACTGGTAGAAACGGTAATATTCGGCGCGATTGTGGAGCTTTCAATTGA 987 51.06 MGRFNLLIALSLLSLFFVPSPTLAQLRQNFYANICPNVENIVRSEVNKKFQQTFVTVPATLRLFFHDCFVQGCDASVIIASTASNKAEKDHPDNLSLAGDGFDTVIKAKAALDAIPQCRNRVSCADILALATRDVIALSGGPSYAVELGRLDGLVSRASDVNGRLPAPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFSNRIYSFAPGRPVDPTLNKTYAAQLQAMCPKNVDPRVAINMDPITPRAFDNIYFRNLQQGMGLFTSDQVLFSDARSRPTVNAWASNSQAFNKAFIEAMTKLGRVGVKTGRNGNIRRDCGAFN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7369170 7371074 - Lsi01G009110.1 Lsi01g00911 653569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00911 328 CDD secretory_peroxidase 25 327 IPR033905 GO:0004601|GO:0042744
Lsi01g00911 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Lsi01g00911 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 Pfam Peroxidase 42 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Lsi01g00911 328 PANTHER PEROXIDASE 8 328 - -
Lsi01g00911 328 PANTHER - 8 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 Gene3D Peroxidase, domain 2 166 307 - -
Lsi01g00911 328 SUPERFAMILY Heme-dependent peroxidases 25 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g00911 328 Gene3D - 29 328 - -
Lsi01g00911 328 ProSiteProfiles Plant heme peroxidase family profile. 25 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00911 Lsi-Chr1:7369170 Lsi03g00401 Lsi-Chr3:4590150 6.31E-148 dispersed
Lsi01g00911 Lsi-Chr1:7369170 Lsi02g00351 Lsi-Chr2:3006170 3.05E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00911 K00430 - csv:101206860 616.69