Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00922 ATGGCAAACCCGGTTTGGATTTTTCTACTTTTCTGTTTCTTTTCTGTGCCGTCCATGGCTGCCGCACAGAAGAAGAAGACTTACATCGTGCATATGGCCAAGTACCAAATGCCTGAGAGTTTTGAGCACCACTTGCACTGGTACGACTCCTCACTCAGATCCGTGTCCGATACTGCTGAGATGATCTATGCTTACAACAACGTCGTTCATGGGTTTTCAACCAGATTGACGGCGGAGGAAGCTCAGCGGCTCGAGGCCCAACCTGGGATTCTGGCTGTGGTGCCAGAGATGAGATATGAACTTCATACCACTCGTACTCCGCAGTTTCTTGGACTCGACAAGAATGCAAATCTTTACCCTGAATCCAACTCCGTGTCGGAGGTCATCATCGGAGTTTTGGATACTGGGATTTGGCCGGAAAGTAAGAGTTTCGATGATACTGGGCTTGGACCGGTACCAAGTAGCTGGAAGGGTGAGTGTGAATCAGGTACTAATTTCAGTGCGTCGAACTGTAACAGGAAGCTGATTGGAGCCAGATTTTTCTCCAAGGGCTACGAGGCGACTCTCGGTCCGATCGATGAATCAAAAGAATCGAGATCTCCGAGAGATGACGATGGCCATGGAACCCACACCGCTACCACTGCCGCCGGTTCTGTAGTTGAAAACGCAAGCTTATTTGGATATGCCTCCGGCACCGCCCGCGGGATGGCCGCGCGTGCAAGGGTCGCCGCCTATAAGGTTTGCTGGGCCGGCGGATGTTTCAGCTCCGATATCTTAGCCGCCATTGAAAAGGCTGTGGAGGACAATGTTAATGTCCTTTCCATGTCACTTGGCGGTGGAGTATCCGATTATTACAAAGACAGTGTTGCCACAGGAGCATTCGCTGCCATGGAGAAAGGCATTCTCATTTCTTGCTCTGCCGGAAATGCCGGCCCCAGTCCTTACAGCTTGTCAAATACGTCTCCATGGATAACAACCGTCGGTGCCGGAACATTAGATCGCGATTTTCCGGCTTATGTCAGTCTTGGCGACGCCAAGAACTTCTCCGGCGTTTCGCTCTATCGAGGCAAGCCATTACCGGGAACATTGTTGCCTTTTATTTATGCTGCTAATGCAAGTAACTCTGGTAATGGCAATTTGTGTATGACCGGTACCTTGATCCCTGAAAAAGTCGCCGGAAAGATCGTGTTCTGCGATCGAGGTGTAAACCCTAGGGTTCAGAAAGGTGCGGTCGTCAAAGCCGCAGGTGGAATCGGAATGGTGCTGGCCAATACTCCCGCAAATGGAGAAGAGCTGGTTGCTGACTCTCATCTTCTACCGGCCACGGCGGTCGGTCAGAAATCCGGCGACATTATACGGAAGTATCTCATTTCGGAGCCCAATCCGACGGTGACGATCTTATTCGAAGGGACTAAATTGGGGATCGAACCATCGCCGGTGGTGGCGGCTTTTAGCTCCCGAGGACCAAATTCGATCACTCCTCAGTTGCTGAAACCCGACATAATAGCCCCTGGCGTCAACATCTTAGCTGGATGGTCAAAATCAGTGGGACCAAGTGGTTTAGCCATTGATGACAGACGAGTGGATTTCAACATTATCTCTGGAACCTCCATGTCCTGCCCCCATGTGAGCGGTCTCGCTGCTCTGATCAAGGGCGCTCATCCCGATTGGAGTCCGGCGGCGATTCGTTCGGCGTTGATGACAACAGCCTACACAGCCTACAAAAACGGCCAAAAGATCCAAGATATCGCCACCGGAAAACCATCCACCCCATTCGATCACGGAGCCGGACACGTCGATCCCGCATCAGCCCTCAATCCGGGTCTTGTTTACGATCTAACGGTGGACGATTACCTAAACTTCCTCTGCGCACTCAACTACACTCCGTCGCAGATCAACTCACTGGCAAGGAGAGATTTCACTTGCGACTCCAAGAAGAAGTACAGTGTCAACGATCTCAACTACCCTTCTTTCGCCGTCGTTTTCGACGGCGTATTGGGCGGCGGAGGCAGTGGTTCCAGTGTAGTCAAGCACACCAGAACTCTTACAAACGTCGGCTCCCCAGGAACCTACAAAGTCTCAATCTCGTCGGAGACCAAACTAGTGAAAATCTCCGTCGAGCCAGAATCTTTGAGCTTCACCGGAGCCAATGAGAAGAAGTCATACACAGTGACATTCACCGCCGCGGCTGGTTCGGCGGCGCCAGCCAGCGCGGAAGGGTTTGGCCGAATTGAATGGTCAGATGGGAAGCACGTGGTGGGAAGTCCGATTGCGTTTAGCTGGACGTAG 2289 51.99 MANPVWIFLLFCFFSVPSMAAAQKKKTYIVHMAKYQMPESFEHHLHWYDSSLRSVSDTAEMIYAYNNVVHGFSTRLTAEEAQRLEAQPGILAVVPEMRYELHTTRTPQFLGLDKNANLYPESNSVSEVIIGVLDTGIWPESKSFDDTGLGPVPSSWKGECESGTNFSASNCNRKLIGARFFSKGYEATLGPIDESKESRSPRDDDGHGTHTATTAAGSVVENASLFGYASGTARGMAARARVAAYKVCWAGGCFSSDILAAIEKAVEDNVNVLSMSLGGGVSDYYKDSVATGAFAAMEKGILISCSAGNAGPSPYSLSNTSPWITTVGAGTLDRDFPAYVSLGDAKNFSGVSLYRGKPLPGTLLPFIYAANASNSGNGNLCMTGTLIPEKVAGKIVFCDRGVNPRVQKGAVVKAAGGIGMVLANTPANGEELVADSHLLPATAVGQKSGDIIRKYLISEPNPTVTILFEGTKLGIEPSPVVAAFSSRGPNSITPQLLKPDIIAPGVNILAGWSKSVGPSGLAIDDRRVDFNIISGTSMSCPHVSGLAALIKGAHPDWSPAAIRSALMTTAYTAYKNGQKIQDIATGKPSTPFDHGAGHVDPASALNPGLVYDLTVDDYLNFLCALNYTPSQINSLARRDFTCDSKKKYSVNDLNYPSFAVVFDGVLGGGGSGSSVVKHTRTLTNVGSPGTYKVSISSETKLVKISVEPESLSFTGANEKKSYTVTFTAAAGSAAPASAEGFGRIEWSDGKHVVGSPIAFSWT 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7459533 7461821 + Lsi01G009220.1 Lsi01g00922 653580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00922 762 Gene3D - 622 761 - -
Lsi01g00922 762 CDD PA_subtilisin_like 339 466 - -
Lsi01g00922 762 Pfam PA domain 381 451 IPR003137 -
Lsi01g00922 762 ProSitePatterns Serine proteases, subtilase family, serine active site. 535 545 IPR023828 -
Lsi01g00922 762 Pfam Peptidase inhibitor I9 27 102 IPR010259 -
Lsi01g00922 762 Gene3D Peptidase S8/S53 domain 128 618 IPR036852 GO:0004252|GO:0006508
Lsi01g00922 762 Pfam Subtilase family 126 575 IPR000209 GO:0006508|GO:0008236
Lsi01g00922 762 PRINTS Subtilisin serine protease family (S8) signature 203 216 IPR015500 -
Lsi01g00922 762 PRINTS Subtilisin serine protease family (S8) signature 534 550 IPR015500 -
Lsi01g00922 762 PRINTS Subtilisin serine protease family (S8) signature 125 144 IPR015500 -
Lsi01g00922 762 Gene3D - 333 474 - -
Lsi01g00922 762 ProSiteProfiles Serine proteases, subtilase domain profile. 98 605 - -
Lsi01g00922 762 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 17 760 - -
Lsi01g00922 762 SUPERFAMILY Subtilisin-like 101 609 IPR036852 GO:0004252|GO:0006508
Lsi01g00922 762 CDD Peptidases_S8_3 99 571 IPR034197 -
Lsi01g00922 762 SUPERFAMILY PA domain 386 452 IPR046450 -
Lsi01g00922 762 MobiDBLite consensus disorder prediction 191 214 - -
Lsi01g00922 762 MobiDBLite consensus disorder prediction 191 209 - -
Lsi01g00922 762 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 17 760 IPR045051 -
Lsi01g00922 762 Pfam Fibronectin type-III domain 652 758 IPR041469 -
Lsi01g00922 762 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 102 IPR037045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00922 - - - csv:101209691 1384.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00922 Lsi-Chr1:7459533 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi01g00922 Lsi-Chr1:7459533 0 transposed
Lsi01g00922 Lsi-Chr1:7459533 Lsi08g01515 Lsi-Chr8:23224529 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g963 . . . . . . . . Cmo03g00970 . . . . . . . . . . . . . . . Cla01g01692 Cam01g1779 Cec04g1428 Cco04g1491 Clacu01g1803 Cmu01g1683 Cre04g1357 Cone6ag1437 Cone9ag1364 . . Lsi01g00922 Csa06g02998 . Cme08g00624 . . . . . . . . . . . Cma03g00941 . . . Cpe10g00465 . . . . . . . . . . . . . . . . . Chy02g00861 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01155 . 22 794 Subtilisin-like Serine Gene Family AT1G01900 52.5 4.7e-224 774.6
Lsi04g01156 . 32 645 Subtilisin-like Serine Gene Family AT1G01900 59.7 1.2e-198 690.3
Lsi05g01054 . 28 769 Subtilisin-like Serine Gene Family AT1G04110 68.7 5.3e-313 1070.1
Lsi04g01764 . 77 807 Subtilisin-like Serine Gene Family AT1G20150 51.9 1.6e-216 749.6
Lsi04g01764 . 48 560 Subtilisin-like Serine Gene Family AT1G20160 60.7 7.8e-173 604.0
Lsi04g00924 . 9 215 Subtilisin-like Serine Gene Family AT1G20160 52.1 3.9e-55 213.0
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT1G20160 51.4 6.7e-39 159.1
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32940 51.5 2.4e-185 646.0
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32950 51.9 2.8e-186 649.0
Lsi07g00238 . 39 737 Subtilisin-like Serine Gene Family AT1G32960 51.0 2.1e-195 679.5
Lsi02g01071 . 13 721 Subtilisin-like Serine Gene Family AT1G62340 54.1 1.3e-219 760.0
Lsi07g01431 . 26 764 Subtilisin-like Serine Gene Family AT2G04160 57.6 1.9e-249 859.0
Lsi07g01435 . 2 765 Subtilisin-like Serine Gene Family AT2G04160 54.0 1.1e-236 816.6
Lsi02g01177 . 3 650 Subtilisin-like Serine Gene Family AT2G04160 54.4 4.4e-198 688.3
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT2G04160 57.5 4.6e-195 678.3
Lsi07g01432 . 2 353 Subtilisin-like Serine Gene Family AT2G04160 52.3 3.3e-100 363.2
Lsi06g00340 . 29 768 Subtilisin-like Serine Gene Family AT2G05920 73.7 0.0e+00 1101.7
Lsi01g00922 . 25 761 Subtilisin-like Serine Gene Family AT2G05920 55.7 6.0e-232 800.8
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT2G05920 57.2 2.9e-218 755.4
Lsi05g01289 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 52.1 3.0e-215 745.3
Lsi02g02892 . 30 761 Subtilisin-like Serine Gene Family AT2G05920 53.5 2.8e-213 738.8
Lsi10g00488 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.0 1.3e-205 713.4
Lsi02g02862 . 33 786 Subtilisin-like Serine Gene Family AT2G05920 51.3 3.8e-202 701.8
Lsi04g01156 . 30 644 Subtilisin-like Serine Gene Family AT2G05920 51.0 6.9e-164 574.7
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT2G05920 53.0 2.3e-42 171.0
Lsi11g00788 CCT 34 835 Subtilisin-like Serine Gene Family AT2G19170 82.1 0.0e+00 1342.4
Lsi02g02892 . 8 768 Subtilisin-like Serine Gene Family AT3G14067 64.8 8.7e-287 983.0
Lsi01g00922 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.1e-223 773.5
Lsi06g00340 . 28 766 Subtilisin-like Serine Gene Family AT3G14067 54.3 2.4e-220 762.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT3G14067 52.9 3.0e-202 702.2
Lsi02g02862 . 36 794 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1205.7
Lsi10g00488 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.5 1.8e-244 842.4
Lsi01g00922 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.3 2.8e-216 748.8
Lsi05g01289 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.3 1.1e-212 736.9
Lsi06g00340 . 32 762 Subtilisin-like Serine Gene Family AT3G14240 51.3 1.3e-210 729.9
Lsi02g02892 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 50.9 6.6e-210 727.6
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT3G14240 51.9 2.2e-197 686.0
Lsi04g01156 . 28 645 Subtilisin-like Serine Gene Family AT3G14240 53.1 1.8e-170 596.7
Lsi10g01083 . 13 735 Subtilisin-like Serine Gene Family AT3G46840 51.4 1.8e-196 682.9
Lsi10g01083 . 13 731 Subtilisin-like Serine Gene Family AT3G46850 51.4 2.5e-198 689.1
Lsi04g01157 . 9 515 Subtilisin-like Serine Gene Family AT4G00230 52.1 1.8e-162 569.7
Lsi04g01158 . 16 505 Subtilisin-like Serine Gene Family AT4G00230 55.1 7.2e-156 547.7
Lsi04g01159 . 63 451 Subtilisin-like Serine Gene Family AT4G00230 65.0 3.1e-143 505.8
Lsi04g00925 . 1 468 Subtilisin-like Serine Gene Family AT4G00230 51.1 6.1e-131 464.9
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10510 51.2 8.6e-188 654.1
Lsi07g00238 . 39 732 Subtilisin-like Serine Gene Family AT4G10520 50.3 4.6e-192 668.3
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10550 51.2 3.2e-190 662.1
Lsi02g00661 . 21 346 Subtilisin-like Serine Gene Family AT4G21320 67.0 2.5e-122 435.3
Lsi03g00103 . 46 338 Subtilisin-like Serine Gene Family AT4G26330 54.9 2.7e-96 350.1
Lsi11g00788 CCT 29 835 Subtilisin-like Serine Gene Family AT4G30020 81.6 0.0e+00 1335.1
Lsi10g00488 . 25 772 Subtilisin-like Serine Gene Family AT4G34980 75.2 0.0e+00 1155.2
Lsi02g02862 . 35 794 Subtilisin-like Serine Gene Family AT4G34980 53.8 3.3e-230 795.0
Lsi01g00922 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.1 2.4e-212 735.7
Lsi05g01289 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 51.0 9.1e-212 733.8
Lsi06g00340 . 28 762 Subtilisin-like Serine Gene Family AT4G34980 50.9 1.0e-207 720.3
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT4G34980 50.5 1.2e-190 663.7
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT4G34980 51.6 5.0e-53 206.5
Lsi07g01433 . 120 293 Subtilisin-like Serine Gene Family AT4G34980 51.7 1.4e-39 161.8
Lsi01g01238 . 1 416 Subtilisin-like Serine Gene Family AT5G03620 51.4 1.8e-135 479.9
Lsi04g00925 . 4 467 Subtilisin-like Serine Gene Family AT5G03620 53.6 1.5e-129 460.3
Lsi04g01159 . 63 449 Subtilisin-like Serine Gene Family AT5G03620 53.7 1.9e-105 380.2
Lsi06g00869 . 291 1037 Subtilisin-like Serine Gene Family AT5G19660 79.4 0.0e+00 1239.2
Lsi01g00203 . 173 424 Subtilisin-like Serine Gene Family AT5G45640 53.5 5.8e-70 262.7
Lsi01g00203 . 175 424 Subtilisin-like Serine Gene Family AT5G45650 55.7 2.7e-73 273.9
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G45650 50.9 5.2e-53 206.5
Lsi05g01289 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 74.0 0.0e+00 1161.0
Lsi01g00922 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.3 4.4e-230 794.7
Lsi06g00340 . 27 766 Subtilisin-like Serine Gene Family AT5G51750 51.1 7.8e-219 757.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT5G51750 54.2 1.3e-213 740.0
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G51750 51.6 2.9e-56 217.2
Lsi07g01433 . 120 295 Subtilisin-like Serine Gene Family AT5G51750 50.6 1.0e-45 182.2
Lsi10g01083 . 28 733 Subtilisin-like Serine Gene Family AT5G58830 51.0 2.4e-182 636.0
Lsi10g01083 . 28 551 Subtilisin-like Serine Gene Family AT5G58840 53.7 1.6e-146 516.5
Lsi10g01083 . 9 733 Subtilisin-like Serine Gene Family AT5G59090 50.7 2.7e-189 659.1
Lsi10g01083 . 10 731 Subtilisin-like Serine Gene Family AT5G59100 51.0 9.4e-198 687.2
Lsi10g01083 . 22 731 Subtilisin-like Serine Gene Family AT5G59120 51.4 2.0e-192 669.5
Lsi10g01083 . 36 730 Subtilisin-like Serine Gene Family AT5G59190 51.9 2.5e-192 669.1
Lsi04g00925 . 1 644 Subtilisin-like Serine Gene Family AT5G59190 50.6 1.2e-173 607.1
Lsi07g01435 . 1 765 Subtilisin-like Serine Gene Family AT5G59810 55.5 2.7e-235 812.0
Lsi07g01431 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 54.9 2.3e-234 808.9
Lsi02g01177 . 1 653 Subtilisin-like Serine Gene Family AT5G59810 59.3 1.4e-220 763.1
Lsi07g01437 . 300 924 Subtilisin-like Serine Gene Family AT5G59810 50.2 8.7e-194 674.1
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT5G59810 53.1 2.8e-176 615.9
Lsi02g01178 . 23 610 Subtilisin-like Serine Gene Family AT5G59810 54.9 5.0e-173 605.1
Lsi07g01432 . 1 353 Subtilisin-like Serine Gene Family AT5G59810 52.2 2.2e-104 377.1
Lsi07g01436 . 2 287 Subtilisin-like Serine Gene Family AT5G59810 52.0 1.2e-86 318.2
Lsi07g01433 . 3 291 Subtilisin-like Serine Gene Family AT5G59810 51.2 2.4e-79 293.9
Lsi01g00922 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Lsi08g01515 . 1 701 Subtilisin-like Serine Gene Family AT5G67360 66.7 2.6e-275 944.9
Lsi06g00340 . 32 767 Subtilisin-like Serine Gene Family AT5G67360 56.6 4.1e-233 804.7
Lsi05g01289 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.8 1.2e-227 786.6
Lsi02g02892 . 8 760 Subtilisin-like Serine Gene Family AT5G67360 55.8 4.4e-227 784.6
Lsi10g00488 . 7 767 Subtilisin-like Serine Gene Family AT5G67360 51.2 1.3e-210 729.9
Lsi02g02862 . 36 789 Subtilisin-like Serine Gene Family AT5G67360 51.8 2.4e-209 725.7
Lsi04g01156 . 32 644 Subtilisin-like Serine Gene Family AT5G67360 50.7 2.4e-164 576.2
Lsi07g01436 . 76 285 Subtilisin-like Serine Gene Family AT5G67360 51.2 3.7e-56 216.9
Lsi07g01433 . 120 296 Subtilisin-like Serine Gene Family AT5G67360 54.7 2.8e-48 190.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002010 2 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 2 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00922 Lsi_Chr01 FPKM 2.442878 1.945224 4.29085 3.733189 1.708073 2.384654 1.967595 8.470397 8.041177 7.554036