Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00941 ATGAGTGCTATGGATTTAAACACTTGCTTTCGCTACTCTTCCCTCTTTCTTATCTTTCTTCTTCTTGCTTTCAATCTCATCCGTCGATCTCATCAAGTTCGAAAAAAGTTACCACCAAGTCCGCCTTCTCTTCCAATCATCGGCCATCTCCATCTCTTGAAAAACGCCCCACTCCACCGAACTTTCCAGAACCTCTCTACCAAATACGGCCCTATTATGTCTCTCCGTCTTGGATCCAAGCTCGCAGTCGTTGTATCCTCATCGGCGGCGGTGGAAGAGTGCTTTACTAAAAACGATGTCGTTCTCGCCAACCGTCCTCATTTTCTAATTGGAAAACACCTCGGCTACAACAACACTACCATGGTAGGGGCTTCATATGGTGACCACTGGCGAAACCTCCGCCGAATTGGCGCCATCGAAATCTTCTCTTCATCTCGAATCAACAAATTTGGCGATATTCGGAGAGATGAAGTGAACCGATTGGTGCGAAAACTTTCACGCAACTCGATCCATCAATTCTCGAAAGTAGAAATGGCATCGGCATTGTCGGAGCTGACGTTCAACATCTCGATGAGAATGGTGACGGGGAAGAGGTATTCTGGTGAAGACGTGGCAGAGAAGGAAGAGTCGATGAGGTTCAAGGAGTTGATTAAGGAGATTGTGGCGATTGTAGGAGTATCAAATCTAGAGGATTGTTTACCCATTCTAAACTGGATTTCAAACGGTTTTAAGAGAAAATTAATACAATTGGGAAAGAAAATGGATGCGTTCCTCCAGGGTGCTATGGATTTAAACACTTGCTTTCGCTACTCTTCCCTCTTTCTTATCTTTCTTCTTCTTGCTTTCAATCTCATCCGTCGATCTCATCAAGTTCGAAAAAAGTTACCACCAAGTCCGCCTTCTCTTCCAATCATCGGCCATCTCCATCTCTTGAAAAACGCCCCACTCCACCGAACTTTCCAGAACCTCTCTACCAAATACGGCCCTATTATGTCTCTCCGTCTTGGATCCAAGCTCGCAGTCGTTGTATCCTCATCGGCGGCGGTGGAAGAGTGCTTTACTAAAAACGATGTCGTTCTCGCCAACCGTCCTCATTTTCTAATTGGAAAACACCTCGGCTACAACAACACTACCATGGTAGGGGCTTCATATGGTGACCACTGGCGAAACCTCCGCCGAATTGGCGCCATCGAAATCTTCTCTTCATCTCGAATCAACAAATTTGGCGATATTCGGAGAGATGAAGTGAACCGATTGGTGCGAAAACTTTCACGCAACTCGATCCATCAATTCTCGAAAGTAGAAATGGCATCGGCATTGTCGGAGCTGACGTTCAACATCTCGATGAGAATGGTGACGGGGAAGAGGTATTCTGGTGAAGACGTGGCAGAGAAGGAAGAGTCGATGAGGTTCAAGGAGTTGATTAAGGAGATTGTGGCGATTGTAGGAGTATCAAATCTAGAGGATTGTTTACCCATTCTAAACTGGATTTCAAACGGTTTTAAGAGAAAATTAATACAATTGGGAAAGAAAATGGATGCGTTCCTCCAGGGGGTGAATTTACATATGTTATTAGTTGTGGGGTCTGACACATCATCCATGACAATGGAATGGGCGTTGTCTCATCTTCTAAACAATCCTCAAGTGTTAAAAAAGGCAAAAGACGAAGTAGACGCTCAAATTGGACAAGAACGACTCGTGAAAGAACTAGATGTGTCCAACCTACCTTATCTTCAAAGAATCATCTCCGAGACTCTTCGGTTGACTCCTGTCGCACCCATGTTGGCTCCCCATTATGCAGCCAACGATTGCACAATATGTGGATATGATGTGCCACGTGACACGATGGTTCTAGTTAATGCCTGGGCCATACATAGAGATCCAAGTGAATGGGAGGATCCCATAAGTTTCAAACCAGATCGATATGAAAAGTCAGATGTCGTGGATGTACACAAATTCTTACCTTTTGGAGTAGGAAGACGAGCTTGTCCTGGGTCTGCCATGGCACATAGGGTGATGGGTCTAACTTTAGCAACCCTGATTCAATGCTTTGAATGGGAGAGGATTGGAGAAGAAGACTTGGATATGAACGAGCAAGTAGGTATCGCATTAACCAAGATGGTGCCATTGGAGGTCATGTGCAAAGCTCGTCCGATAATCAACAACCTTCTTCACTAA 2178 44.95 MSAMDLNTCFRYSSLFLIFLLLAFNLIRRSHQVRKKLPPSPPSLPIIGHLHLLKNAPLHRTFQNLSTKYGPIMSLRLGSKLAVVVSSSAAVEECFTKNDVVLANRPHFLIGKHLGYNNTTMVGASYGDHWRNLRRIGAIEIFSSSRINKFGDIRRDEVNRLVRKLSRNSIHQFSKVEMASALSELTFNISMRMVTGKRYSGEDVAEKEESMRFKELIKEIVAIVGVSNLEDCLPILNWISNGFKRKLIQLGKKMDAFLQGAMDLNTCFRYSSLFLIFLLLAFNLIRRSHQVRKKLPPSPPSLPIIGHLHLLKNAPLHRTFQNLSTKYGPIMSLRLGSKLAVVVSSSAAVEECFTKNDVVLANRPHFLIGKHLGYNNTTMVGASYGDHWRNLRRIGAIEIFSSSRINKFGDIRRDEVNRLVRKLSRNSIHQFSKVEMASALSELTFNISMRMVTGKRYSGEDVAEKEESMRFKELIKEIVAIVGVSNLEDCLPILNWISNGFKRKLIQLGKKMDAFLQGVNLHMLLVVGSDTSSMTMEWALSHLLNNPQVLKKAKDEVDAQIGQERLVKELDVSNLPYLQRIISETLRLTPVAPMLAPHYAANDCTICGYDVPRDTMVLVNAWAIHRDPSEWEDPISFKPDRYEKSDVVDVHKFLPFGVGRRACPGSAMAHRVMGLTLATLIQCFEWERIGEEDLDMNEQVGIALTKMVPLEVMCKARPIINNLLH 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7610909 7623131 + Lsi01G009410.1 Lsi01g00941 653599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00941 725 Pfam Cytochrome P450 38 260 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 Pfam Cytochrome P450 296 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 Pfam Cytochrome P450 524 704 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 Gene3D Cytochrome P450 521 717 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 656 665 IPR017972 GO:0005506|GO:0016705
Lsi01g00941 725 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 522 721 - -
Lsi01g00941 725 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 12 263 - -
Lsi01g00941 725 PRINTS E-class P450 group I signature 663 686 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 620 644 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 348 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 536 562 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 579 597 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 324 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS E-class P450 group I signature 653 663 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 270 519 - -
Lsi01g00941 725 SUPERFAMILY Cytochrome P450 38 263 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS P450 superfamily signature 527 544 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS P450 superfamily signature 654 663 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PRINTS P450 superfamily signature 580 591 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 522 721 - -
Lsi01g00941 725 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 270 519 - -
Lsi01g00941 725 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 12 263 - -
Lsi01g00941 725 Gene3D Cytochrome P450 288 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 Gene3D Cytochrome P450 30 265 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00941 725 SUPERFAMILY Cytochrome P450 296 717 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00941 Lsi-Chr1:7610909 Lsi01g00943 Lsi-Chr1:7635001 8.75E-125 dispersed
Lsi01g00941 Lsi-Chr1:7610909 Lsi01g00942 Lsi-Chr1:7626212 1.24E-122 tandem
Lsi01g00941 Lsi-Chr1:7610909 Lsi08g01509 Lsi-Chr8:23190408 1.00E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00941 K13260 K24542 zju:107404433 536.569