Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00942 ATGGATTTAGACACTTACTTCTTCTACTCTTCCCTCTCTTTTTTCTTTCTTCTTCTTGCTTTCAACCTCATTCGTCGATCTCTTCGAATTCGCCATAATTTACCGCCGAGTCCGCCCTCTCTTCCGATCATTGGTCATCTCCATCTCTTGAAAAAGCCACTACACCGAAATTTTCAGAATCTCTCCGCCAAATATGGCCCTGTTATGTCTCTCCGTCTCGGATCTAAGCTCGCAGTTGTTATATCCTCTTCGTCGGCAGCGGAGGAATGCTTCACAAAAAATGACGTCGTTCTCGCTAACCGTCCTCGTTTGCTCATTGGAAAATACATCGGCTATAACTACACTACCATGATTGGGGCTTCGTACGGTGACCACTGGCGAAACCTTCGTCGAATAGGCGCCATCGAAATCTTCTCTGCATCTAGAATTAACAAATTCGCCGATATCCGGAGGGATGAAGTGAGGCGATTGGTGCGAAAACTATCAGATAATTCCATTAATCAATTCTCGAAAGTAGAAATTCAATCGGCGATGTCAGAGCTGACGTTCAACATCTCAATGAGAATGGCGGCCGGAAAGAGGTATTTCGGCGACGATGTGACGAACGAGGAAGAGGCGAGGAGATTCAGAGAGTTAATTAAAGAGATTGTGGCGATTGCAGGAGTATCAAATCCAGGGGATTTCTTACCCATATTGAACTGGATTTCGAACGGTTTTGAGAAGAAATTGATTCAATTGGGGAAGAAAGTGGATGCGTTCTTGCAGGGGCTAATCGATGATCACCGCAGGAAGAAGGAAGAAGGAAGGAACACGATGATCGATCACTTACTTTCTCTTCAAGAATCGGAACCCGATCAATATAACGATCAAATAATCAAAGGATTTATAATGGTATTACTGACTGCGGGGTCCGATACATCAGCTGTGACAATGGAATGGGCTTTGTCTTATCTACTAAACAATTCCCAAGTGTTAAAGAAGGTAAAAGACGAAGTAGACACTCAAATTGGACAGGAACGACTCGTGGATGAACCAGACATTTCCAAACTACCTTATCTTCAAAGAATCATCTCTGAGACTCTTCGACTGAATCCCGCAGCACCTATGTTAGTTCCCCATTATGCAGCCAATGATTGCACAATATGCGGATACGATGTGCCACGCGACACAATGGTACTAGTCAATGCTTGGGCCATACATAGGGATTCAAACGAATGGGAGGATCCCCTAAGTTTCAAACCAGAGCGACACGAAAAGTTAGAAGCCGTGGAGGTACACAAGTTGTTGCCTTTTGGAGTAGGGAGGCGAGCTTGCCCGGGTTCTACTATGGCGCACAGAGTGATGGGTCTAACTTTGGCAACCTTGATTCAATGTTTTGAGTGGGAGAGGATTGGAGAAGAAGACATCGATATGGACGAGCGGGTTGGTGTCACAATGACCAAGTTGGTGCCATTGGAAGCCATGTGCAAAGCTCGTCCCATCATCAATAGCCTTCTTCACTAA 1503 45.04 MDLDTYFFYSSLSFFFLLLAFNLIRRSLRIRHNLPPSPPSLPIIGHLHLLKKPLHRNFQNLSAKYGPVMSLRLGSKLAVVISSSSAAEECFTKNDVVLANRPRLLIGKYIGYNYTTMIGASYGDHWRNLRRIGAIEIFSASRINKFADIRRDEVRRLVRKLSDNSINQFSKVEIQSAMSELTFNISMRMAAGKRYFGDDVTNEEEARRFRELIKEIVAIAGVSNPGDFLPILNWISNGFEKKLIQLGKKVDAFLQGLIDDHRRKKEEGRNTMIDHLLSLQESEPDQYNDQIIKGFIMVLLTAGSDTSAVTMEWALSYLLNNSQVLKKVKDEVDTQIGQERLVDEPDISKLPYLQRIISETLRLNPAAPMLVPHYAANDCTICGYDVPRDTMVLVNAWAIHRDSNEWEDPLSFKPERHEKLEAVEVHKLLPFGVGRRACPGSTMAHRVMGLTLATLIQCFEWERIGEEDIDMDERVGVTMTKLVPLEAMCKARPIINSLLH 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7626212 7629216 + Lsi01G009420.1 Lsi01g00942 653600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00942 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Lsi01g00942 500 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 8 496 - -
Lsi01g00942 500 SUPERFAMILY Cytochrome P450 35 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 Pfam Cytochrome P450 35 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 496 - -
Lsi01g00942 500 Gene3D Cytochrome P450 20 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00942 500 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00942 Lsi-Chr1:7626212 Lsi01g00944 Lsi-Chr1:7654783 0 dispersed
Lsi04g01510 Lsi-Chr4:22742692 Lsi01g00942 Lsi-Chr1:7626212 1.33E-155 dispersed
Lsi08g01509 Lsi-Chr8:23190408 Lsi01g00942 Lsi-Chr1:7626212 7.05E-163 dispersed
Lsi09g01785 Lsi-Chr9:26602621 Lsi01g00942 Lsi-Chr1:7626212 4.01E-166 dispersed
Lsi01g00941 Lsi-Chr1:7610909 Lsi01g00942 Lsi-Chr1:7626212 1.24E-122 tandem
Lsi01g00942 Lsi-Chr1:7626212 Lsi01g00943 Lsi-Chr1:7635001 0 tandem
Lsi01g00942 Lsi-Chr1:7626212 Lsi04g01505 Lsi-Chr4:22690699 4.61E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00942 K13260 - csv:101215449 848.58