Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00943 ATGGATTTAGACACTTACTTCTTCTACTCTTCCCTCTCTCTTTTCTTTCTTCTTCTTGCTTTCAACCTCATTCGTCGATCTCTTCGAATTCGCCATAATTTACCGCCGAGTCCGCCCTCTCTTTCGATCATCGGTCATCTCCATCTCTTGAAAAAGCCAATACACCGAAATTTCCAGAATCTCTCTGTCAAATATGGTCATGTTATGTCTCTCCGCCTCGGATCTAAGCTCGCAGTTGTTATATCCTCGTCGTCGGCAGCGGAGGAATGTTTCACTAAAAACGACGTCGTTCTCGCCAACCGTCCTCGTTTGCTCATTGGAAAATACATCGGCTATAACTACACTACCATGGTTGGGGCTTCGTACGGTGACCATTGGCGAGACCTTCGTCGAATAGGCGCCATTGAAATCTTCTCTCCATCTCGAATCAACAAATTTGCCGATATTCGGAGGGATGAAGTGAAGCGATTGGTGCGAAAACTATCGCATAATTCGATTAATCAATTCTCGAAAGTAGAAATTCAATTGGCGATGTCGGCGCTGATGTTCAACATCTCAATGAGAATGGCGGCTGGAAAGAGGTATTTTGGCGATGACGTGACGAACGAGGAAGAGGCGAGGAGATTCAGGGAGTTAATTAAAGAGATTGTGGCGATTGCAGGAGTATCAAATCTAGGGGATTTCTTACCCATATTGAACTGGATTTCGAACGATTTTGAGAAGAAATTGACTCAATTGGGGAAGAAAGTGGATGCGTTCATGCAAGGACTAATTGATGATCACCGCAGGAAGAAGGAAGAAGGAAGGAATACGATGATCGATCACTTGCTTTCTCTTCAAGAATCGGAACCCGATCGCTATAACGATCAAATAATCAAAGGATTTATAATGGTAATATTGACTGCAGGTTCCGACTCATCAGCTGTGACAATGGAATGTATCATCTCTGAGACTCTTCGTCTGACTCCCGCAACACCTACGTTGGTTCCCCATTATGCAGCCAATGATTGCACAATATGTGGATACGATGTGCCACGCGACACAATAGTACTAGTCAATGCCTGGGCCATACATAGGGATTCAAATGAATGGGAGGATCCCTTAAGTTTCAAACCAGAGCGACACGAAAAGTCAGAAGCCGTGGAGGTATACAAGTTGTTGCCTTTCGGAGTAGGGAGGCGAGCTTGTCCAGGTTCTGCTATGGCACACAGAGTGATGGGTCTAACTTTGGCAACCCTGATTCAATGCTTTGAGTGGGAGAGGATTGGAGAAGAAGACATCAATATGGACGAGCGGGCTGGTGCCACAATGACTAAGGTGGTGCCATTGGAGGTGATATTCATTTTCAAGATTGAGATTAATAATGACGTGAGATCAAAGAAAAATAAAATAGCGAAGTGA 1401 44.47 MDLDTYFFYSSLSLFFLLLAFNLIRRSLRIRHNLPPSPPSLSIIGHLHLLKKPIHRNFQNLSVKYGHVMSLRLGSKLAVVISSSSAAEECFTKNDVVLANRPRLLIGKYIGYNYTTMVGASYGDHWRDLRRIGAIEIFSPSRINKFADIRRDEVKRLVRKLSHNSINQFSKVEIQLAMSALMFNISMRMAAGKRYFGDDVTNEEEARRFRELIKEIVAIAGVSNLGDFLPILNWISNDFEKKLTQLGKKVDAFMQGLIDDHRRKKEEGRNTMIDHLLSLQESEPDRYNDQIIKGFIMVILTAGSDSSAVTMECIISETLRLTPATPTLVPHYAANDCTICGYDVPRDTIVLVNAWAIHRDSNEWEDPLSFKPERHEKSEAVEVYKLLPFGVGRRACPGSAMAHRVMGLTLATLIQCFEWERIGEEDINMDERAGATMTKVVPLEVIFIFKIEINNDVRSKKNKIAK 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7635001 7637822 + Lsi01G009430.1 Lsi01g00943 653601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00943 466 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 311 450 - -
Lsi01g00943 466 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 312 - -
Lsi01g00943 466 PRINTS E-class P450 group I signature 396 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 312 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 353 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PRINTS E-class P450 group I signature 386 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 Pfam Cytochrome P450 313 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 Pfam Cytochrome P450 35 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 SUPERFAMILY Cytochrome P450 35 448 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 389 398 IPR017972 GO:0005506|GO:0016705
Lsi01g00943 466 Gene3D Cytochrome P450 313 445 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 Gene3D Cytochrome P450 20 312 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00943 466 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 311 450 - -
Lsi01g00943 466 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 8 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00941 Lsi-Chr1:7610909 Lsi01g00943 Lsi-Chr1:7635001 8.75E-125 dispersed
Lsi01g00943 Lsi-Chr1:7635001 Lsi10g00169 Lsi-Chr10:2729368 5.96E-145 dispersed
Lsi10g00171 Lsi-Chr10:2778155 Lsi01g00943 Lsi-Chr1:7635001 1.78E-102 dispersed
Lsi01g00942 Lsi-Chr1:7626212 Lsi01g00943 Lsi-Chr1:7635001 0 tandem
Lsi01g00943 Lsi-Chr1:7635001 Lsi01g00944 Lsi-Chr1:7654783 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00943 K13260 - csv:101215449 703.745