Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00944 ATGGAAAATTACTCTCTGCTTTTCCTTTTTCTCTCTCTTATCTCTCTCCTCTTCGCTTTCAACCTCCGCCGTCGCAGAAACTTACCGCCCAGTCCGCCGTCTCTTCCCATCATCGGCCACCTCCATTACCTCAAAATCCCCGTCCACCGAACTTTCCAGAACCTCTCTGAAAAATACGGACCAGTAATCTCTCTATGGTTCGGATCTCGCCTTGTCGTGGTCGTCTCGTCGTTGGCGGTGATGGAGGAGTGCTTCACTAAGAATGACATCGTTTTAGCCAACCGTCCTAGGTTGCTAGTCGGCAAATACATCGGCTACAACCACACTACGATGGTAGCGTCACCGTACGGCGAACACTGGCGAAACCTCCGTCGAATCGGAGCGATCGAGATATTTTCGGCATCTCGCCTCAATAAATTCGGCGGAATCCGGAAGGACGAAGTGGAACGGTTACTGAGGAAGCTATCGAGGAATTCGTTGTATGGATTCTCGAAGGTACAGATTCAATCGGCGATTTCGGAAATGACGTTTAACATATCGATGAGAATGGCGGCCGGAAAGAGGTATTTCGGTGAGGAAGTGACGGACGAGGTGGAAGCGAGACAGTTCAGAGAGCTGATTAAACAGGTGGTGGCGTTGGGAGGAGTATCGAATCCAGGAGATTTCATTCCGATGATAAATTGGATTCCGAACAGGTTCAAGAGGAAGGTTTTGGGACTTGCGAAGAGGATGGACGCGCTCTTGCAGGGATTGATCGATCAACATCGAAGCGAGAAGGAAGAAGGAAGGAATACGATGATCGATCATTTGCTCTCTCTGCAAGAATCAGAGCCGGAGTACTATGGAGATCAAATCATCAAAGGAATTGTTCTGATTCAAGTGATGGGACTTGTGGGACCTAACGTCTTATGTGTACCGATAACATTTGCCATAAAAGTTTTATTACTAGCAGGAACAGACACATCAGCTGTAACAATTGAATGGGCTCTAGCTCACTTGCTCAACAATCCAGAGGTACTAAAAAAGGCTAGAGAAGAACTAGACGCCCAAATCGGAGAAGAAAGACTAGTGGAAGAATCAGACGTCCCCAAGTTACCATATCTTCAAGGAATCATCTCCGAGACTCTTCGACTGAACCCAGCTGCTCCAATGTTAGTGCCACATCTCACCTCCGACGATTGCACAATCAGCGGCTACGGTATACCACGTGACACAATTGTATTGGTTAACGCATGGGCCATCCACAGAGATCCTAATCAATGGGGAGAACCCACACTATTCAAACCAGAAAGACACCAAAAGTCAGAATTAGGTGATCATCAGGTCCATAAATTGGTTCCGTTTGGAGTTGGACGACGAGCTTGCCCTGGCTCTGGCATGGCGCAGCGAGTGGTGGGGTTGGCTCTGGCCGCGCTGATTCAGTGCTACGAGTGGGAGAGGATTGGTGATGAGAAAGTGGACATGGCCGAGGGAAGAGGCGTCACTATGCCCAAGGCTGTGCCATTGGAAGCCATGTGTAAACCTCGTCGTATCATCCACAACCTTTTTAACTGA 1554 48.58 MENYSLLFLFLSLISLLFAFNLRRRRNLPPSPPSLPIIGHLHYLKIPVHRTFQNLSEKYGPVISLWFGSRLVVVVSSLAVMEECFTKNDIVLANRPRLLVGKYIGYNHTTMVASPYGEHWRNLRRIGAIEIFSASRLNKFGGIRKDEVERLLRKLSRNSLYGFSKVQIQSAISEMTFNISMRMAAGKRYFGEEVTDEVEARQFRELIKQVVALGGVSNPGDFIPMINWIPNRFKRKVLGLAKRMDALLQGLIDQHRSEKEEGRNTMIDHLLSLQESEPEYYGDQIIKGIVLIQVMGLVGPNVLCVPITFAIKVLLLAGTDTSAVTIEWALAHLLNNPEVLKKAREELDAQIGEERLVEESDVPKLPYLQGIISETLRLNPAAPMLVPHLTSDDCTISGYGIPRDTIVLVNAWAIHRDPNQWGEPTLFKPERHQKSELGDHQVHKLVPFGVGRRACPGSGMAQRVVGLALAALIQCYEWERIGDEKVDMAEGRGVTMPKAVPLEAMCKPRRIIHNLFN 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7654783 7658089 + Lsi01G009440.1 Lsi01g00944 653602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00944 517 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 4 514 - -
Lsi01g00944 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Lsi01g00944 517 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 Pfam Cytochrome P450 29 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 Pfam Cytochrome P450 311 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 514 - -
Lsi01g00944 517 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 175 193 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 80 101 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 Gene3D Cytochrome P450 21 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi01g00944 517 SUPERFAMILY Cytochrome P450 29 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00942 Lsi-Chr1:7626212 Lsi01g00944 Lsi-Chr1:7654783 0 dispersed
Lsi01g00944 Lsi-Chr1:7654783 Lsi10g00169 Lsi-Chr10:2729368 4.32E-166 dispersed
Lsi04g02368 Lsi-Chr4:30823262 Lsi01g00944 Lsi-Chr1:7654783 4.10E-158 dispersed
Lsi10g00172 Lsi-Chr10:2780304 Lsi01g00944 Lsi-Chr1:7654783 1.61E-75 dispersed
Lsi01g00943 Lsi-Chr1:7635001 Lsi01g00944 Lsi-Chr1:7654783 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00944 K13260 - csv:101211829 817.764