Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00954 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACAGTCGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTACGTCTGGAATATCATATTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTACCGGCTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAAGCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGCCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAAAACGTGGTGGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCGGAGGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTACTTTGAGCGGATTTTGACCCATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCACAGTGTTGACTTCTCCTTAGCAAGGCTATTTTTGTTAGTCTTTTGCAATTATTCTGTTCTAGTTCTAGTTTATTATGATATTAATTTCTGCCTTATGAAGATTTTGTTCTCAACAGGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGAGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGTCCGTCACTGGGAGTAAAACGTGCCCTGAGTTGTGGAGAAAACAAAGTATTATTAAGTGACACGGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAGCTGGCAAAGGATCTGATCGTCGCTCTATTCATGATCAAGCATCAGGTCATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGCGAGGAAAATGACGACAACGTATTCTCTGATAGTGATGAAGAAAATGGTGACATTAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGACCATTCATCAACAACAATTGCCTCTGAAAGAATTGGGAATTTATCGTATGAAACTAATCATTTGCCCCTTGGAAATGAGAAAAACTCACAACCTTATGCTCCAAAAGACCCTGCCGCGATACAACCATCAGGCCTTGAAATCCCGAATTTGGATTCAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCTGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1806 40.86 MDNGTSNSSTQSAVNNSAPTVDSQSSKGDNLTSILSTSGISYWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSTGFGLRIPAMSPVQSDGAADTKAAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSVDFSLARLFLLVFCNYSVLVLVYYDINFCLMKILFSTGKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCPSLGVKRALSCGENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSAGKGSDRRSIHDQASGHEAAQSNTNKISGGEENDDNVFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSSTTIASERIGNLSYETNHLPLGNEKNSQPYAPKDPAAIQPSGLEIPNLDSVRASDFKAIAADASVFTFGDEEDFDSE 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7754241 7759558 - Lsi01G009540.1 Lsi01g00954 653612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00954 601 MobiDBLite consensus disorder prediction 541 566 - -
Lsi01g00954 601 ProSiteProfiles C2 tensin-type domain profile. 280 443 IPR014020 -
Lsi01g00954 601 MobiDBLite consensus disorder prediction 503 527 - -
Lsi01g00954 601 MobiDBLite consensus disorder prediction 455 469 - -
Lsi01g00954 601 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 339 601 - -
Lsi01g00954 601 MobiDBLite consensus disorder prediction 470 489 - -
Lsi01g00954 601 ProSiteProfiles Phosphatase tensin-type domain profile. 135 273 IPR029023 -
Lsi01g00954 601 SMART PTEN_C2_2 278 442 IPR014020 -
Lsi01g00954 601 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 208 247 IPR000387 GO:0016311|GO:0016791
Lsi01g00954 601 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 143 270 IPR029021 -
Lsi01g00954 601 MobiDBLite consensus disorder prediction 449 527 - -
Lsi01g00954 601 Gene3D Protein tyrosine phosphatase superfamily 120 276 IPR029021 -
Lsi01g00954 601 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 339 601 - -
Lsi01g00954 601 MobiDBLite consensus disorder prediction 1 32 - -
Lsi01g00954 601 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 168 - -
Lsi01g00954 601 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 172 307 - -
Lsi01g00954 601 ProSitePatterns Tyrosine specific protein phosphatases active site. 210 220 IPR016130 GO:0016311|GO:0016791
Lsi01g00954 601 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 168 - -
Lsi01g00954 601 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 172 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g01516 Lsi-Chr3:26173837 7.16E-28 dispersed
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g00522 Lsi-Chr3:6061136 1.08E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00954 K01110 - csv:101213277 981.474