Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00954 | ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACAGTCGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTACGTCTGGAATATCATATTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTACCGGCTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAAGCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGCCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAAATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAAAACGTGGTGGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCGGAGGCAATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTACTTTGAGCGGATTTTGACCCATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACAATATCAAATCACAGTGTTGACTTCTCCTTAGCAAGGCTATTTTTGTTAGTCTTTTGCAATTATTCTGTTCTAGTTCTAGTTTATTATGATATTAATTTCTGCCTTATGAAGATTTTGTTCTCAACAGGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGAGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGTCCGTCACTGGGAGTAAAACGTGCCCTGAGTTGTGGAGAAAACAAAGTATTATTAAGTGACACGGATCTTGATGGTTTTGATAAGAGAAAACTTCCTACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAGCTGGCAAAGGATCTGATCGTCGCTCTATTCATGATCAAGCATCAGGTCATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGCGAGGAAAATGACGACAACGTATTCTCTGATAGTGATGAAGAAAATGGTGACATTAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGACCATTCATCAACAACAATTGCCTCTGAAAGAATTGGGAATTTATCGTATGAAACTAATCATTTGCCCCTTGGAAATGAGAAAAACTCACAACCTTATGCTCCAAAAGACCCTGCCGCGATACAACCATCAGGCCTTGAAATCCCGAATTTGGATTCAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCTGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA | 1806 | 40.86 | MDNGTSNSSTQSAVNNSAPTVDSQSSKGDNLTSILSTSGISYWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSTGFGLRIPAMSPVQSDGAADTKAAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEVAHFPFDDHNCPPIHLTKSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSVDFSLARLFLLVFCNYSVLVLVYYDINFCLMKILFSTGKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCPSLGVKRALSCGENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSAGKGSDRRSIHDQASGHEAAQSNTNKISGGEENDDNVFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSSTTIASERIGNLSYETNHLPLGNEKNSQPYAPKDPAAIQPSGLEIPNLDSVRASDFKAIAADASVFTFGDEEDFDSE | 601 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7754241 | 7759558 | - | Lsi01G009540.1 | Lsi01g00954 | 653612 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 541 | 566 | - | - | |
Lsi01g00954 | 601 | ProSiteProfiles | C2 tensin-type domain profile. | 280 | 443 | IPR014020 | - | |
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 503 | 527 | - | - | |
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 455 | 469 | - | - | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 339 | 601 | - | - | |
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 470 | 489 | - | - | |
Lsi01g00954 | 601 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 135 | 273 | IPR029023 | - | |
Lsi01g00954 | 601 | SMART | PTEN_C2_2 | 278 | 442 | IPR014020 | - | |
Lsi01g00954 | 601 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 208 | 247 | IPR000387 | GO:0016311|GO:0016791 | |
Lsi01g00954 | 601 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 143 | 270 | IPR029021 | - | |
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 449 | 527 | - | - | |
Lsi01g00954 | 601 | Gene3D | Protein tyrosine phosphatase superfamily | 120 | 276 | IPR029021 | - | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 339 | 601 | - | - | |
Lsi01g00954 | 601 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 5 | 168 | - | - | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 172 | 307 | - | - | |
Lsi01g00954 | 601 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 210 | 220 | IPR016130 | GO:0016311|GO:0016791 | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 5 | 168 | - | - | |
Lsi01g00954 | 601 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B | 172 | 307 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00954 | Lsi-Chr1:7754241 | Lsi03g01516 | Lsi-Chr3:26173837 | 7.16E-28 | dispersed | |
Lsi01g00954 | Lsi-Chr1:7754241 | Lsi03g00522 | Lsi-Chr3:6061136 | 1.08E-24 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00954 | K01110 | - | csv:101213277 | 981.474 |