Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00960 ATGGCCGTGGAGATCAACTCCCACCCCTACCCACTTCTCACTATGGAAGCCAACGCCGTCCAAGAAGCTGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTCTCCAATGCAAATGCTCCTCAACCTCACTCCTTACCCTCCTCTATTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCCGCCGTCTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGCTTCAGAAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACAACAACAAAAACAACGATTCTCCTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGAAACCAAGCATCCTTCCTCCTCTTCATCCCCGTTTCTCATTTCCAACCTCTCCCAGGTCTCCTCCGTTGGGAAACCCCCACTTTCCACTTCTTCCCTTAAGAGAAAGTGTAGCTCCGATAACTTGGGATCCGGAAAGTGCGCCGCTGCTTCTTCTTCTGCTCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTAGTGAGGGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGATGATTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGGTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAACACAATCACACCCTCCCTGCGCCCGAAACCTCTACTCTCATCCTCGAGTCCTCTTAG 894 53.24 MAVEINSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSIQSPIDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNNNKNNDSPNFSAHNSFISSLTGDAETKHPSSSSSPFLISNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLPAPETSTLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7792775 7794436 + Lsi01G009600.1 Lsi01g00960 653618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00960 297 Gene3D WRKY domain 208 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00960 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 297 IPR044810 GO:0003700
Lsi01g00960 297 MobiDBLite consensus disorder prediction 100 133 - -
Lsi01g00960 297 MobiDBLite consensus disorder prediction 165 189 - -
Lsi01g00960 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00960 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00960 297 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 11 297 - -
Lsi01g00960 297 SUPERFAMILY WRKY DNA-binding domain 221 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi01g00960 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi01g00960 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00960 Lsi-Chr1:7792775 Lsi05g00976 Lsi-Chr5:17003245 1.05E-54 dispersed
Lsi05g00523 Lsi-Chr5:6549831 Lsi01g00960 Lsi-Chr1:7792775 1.74E-12 transposed
Lsi06g01220 Lsi-Chr6:22581595 Lsi01g00960 Lsi-Chr1:7792775 1.02E-70 transposed
Lsi10g00187 Lsi-Chr10:3136522 Lsi01g00960 Lsi-Chr1:7792775 8.18E-109 transposed
Lsi01g00960 Lsi-Chr1:7792775 Lsi04g01528 Lsi-Chr4:22895393 2.57E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24636 PF03106 WRKY 3.80E-26 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00960 - - csv:101214001 486.878