Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00965 | ATGGACGGCGGCGGAGGAGGAGAAGCTACCAGAAAAAGAGGGCTCGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTTAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGCGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGGGCAAGAGTGGATGCTCTGGAGAGTTCGTTAGGGCAACACAGTCACCACAATCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGGTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGATTGGGAGAGAGTGGAGAGACCGTGA | 528 | 55.87 | MDGGGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFDWERVERP | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7834851 | 7835378 | + | Lsi01G009650.1 | Lsi01g00965 | 653623 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00965 | 175 | Gene3D | AP2/ERF domain | 20 | 78 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | SUPERFAMILY | DNA-binding domain | 20 | 78 | IPR016177 | GO:0003677 | |
Lsi01g00965 | 175 | MobiDBLite | consensus disorder prediction | 116 | 175 | - | - | |
Lsi01g00965 | 175 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 6 | 161 | - | - | |
Lsi01g00965 | 175 | PRINTS | Ethylene responsive element binding protein signature | 21 | 32 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | PRINTS | Ethylene responsive element binding protein signature | 59 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | SMART | rav1_2 | 20 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | Pfam | AP2 domain | 21 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | CDD | AP2 | 21 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | ProSiteProfiles | AP2/ERF domain profile. | 20 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi01g00965 | 175 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 6 | 161 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00965 | Lsi10g00522 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi11g00240 | Lsi-Chr11:2429121 | 1.40E-25 | dispersed | |
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi10g00522 | Lsi-Chr10:7432528 | 3.38E-42 | wgd | |
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi11g01015 | Lsi-Chr11:17221551 | 3.44E-23 | wgd | |
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi04g01534 | Lsi-Chr4:22965083 | 1.02E-54 | wgd | |
Lsi01g00965 | Lsi-Chr1:7834851 | Lsi08g01490 | Lsi-Chr8:23067211 | 4.30E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24637 | PF00847 | AP2 | 2.40E-11 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00965 | K09286 | - | csv:101214481 | 290.812 |