Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00965 ATGGACGGCGGCGGAGGAGGAGAAGCTACCAGAAAAAGAGGGCTCGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTTAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGCGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGGGCAAGAGTGGATGCTCTGGAGAGTTCGTTAGGGCAACACAGTCACCACAATCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGGTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGATTGGGAGAGAGTGGAGAGACCGTGA 528 55.87 MDGGGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFDWERVERP 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7834851 7835378 + Lsi01G009650.1 Lsi01g00965 653623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00965 175 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Lsi01g00965 175 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lsi01g00965 175 MobiDBLite consensus disorder prediction 116 175 - -
Lsi01g00965 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 6 161 - -
Lsi01g00965 175 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lsi01g00965 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 161 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00965 Lsi10g00522 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00965 Lsi-Chr1:7834851 Lsi11g00240 Lsi-Chr11:2429121 1.40E-25 dispersed
Lsi01g00965 Lsi-Chr1:7834851 Lsi10g00522 Lsi-Chr10:7432528 3.38E-42 wgd
Lsi01g00965 Lsi-Chr1:7834851 Lsi11g01015 Lsi-Chr11:17221551 3.44E-23 wgd
Lsi01g00965 Lsi-Chr1:7834851 Lsi04g01534 Lsi-Chr4:22965083 1.02E-54 wgd
Lsi01g00965 Lsi-Chr1:7834851 Lsi08g01490 Lsi-Chr8:23067211 4.30E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24637 PF00847 AP2 2.40E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00965 K09286 - csv:101214481 290.812