Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00966 ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAAGGGGAAGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCGAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAGGAAGTGGAAGTGGATGGATCCGATGAGGAGGAACCAACGCCCATGGTCATCACTCGTCAGTTTTTCCCACTCGAAGATACTGAAATCCAACCTCCCCTTCCACCTTCTTCTACTTCTACTTCTACTTCTTCTCCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCATCCCGATCCTCTTGCCGCTCCTAATAATTCCATCACCCTCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCGAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACTGGCCGTTGGGAGTCACATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGACGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCATAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACGGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAATCCGACAACTGGTAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1488 31.05 MWDLNDWPDVREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEEVEVDGSDEEEPTPMVITRQFFPLEDTEIQPPLPPSSTSTSTSSPAFPRAHWVGVKFAHPDPLAAPNNSITLTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTGKKKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7854085 7856406 + Lsi01G009660.1 Lsi01g00966 653624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00966 496 MobiDBLite consensus disorder prediction 1 35 - -
Lsi01g00966 496 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 Pfam AP2 domain 235 284 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 Coils Coil 308 310 - -
Lsi01g00966 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 302 - -
Lsi01g00966 496 MobiDBLite consensus disorder prediction 1 97 - -
Lsi01g00966 496 CDD AP2 235 295 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 302 - -
Lsi01g00966 496 MobiDBLite consensus disorder prediction 48 62 - -
Lsi01g00966 496 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Lsi01g00966 496 SUPERFAMILY DNA-binding domain 235 295 IPR016177 GO:0003677
Lsi01g00966 496 MobiDBLite consensus disorder prediction 83 97 - -
Lsi01g00966 496 MobiDBLite consensus disorder prediction 115 142 - -
Lsi01g00966 496 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Lsi01g00966 496 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700|GO:0006355
Lsi01g00966 496 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00966 Lsi10g00523 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00966 Lsi-Chr1:7854085 Lsi10g01313 Lsi-Chr10:17329232 1.62E-10 dispersed
Lsi01g00966 Lsi-Chr1:7854085 Lsi10g00523 Lsi-Chr10:7461585 9.60E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24638 PF00847 AP2 3.40E-10 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00966 K09284 - csv:101214724 489.189