Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00968 ATGGACCATTCCATTCCCAACAACTGCGATCGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTTCTCTCTCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACATTCCCCCTCCTTACGGGCCGCCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCATCGTCCGCTATATTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGCTGAAGAGCTCCCTACAAAGCCCAATACTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATCTGTCTGAAAAGAGAAGGAGGAGCAGAATAAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCAAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAACTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGGAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTGCATTTGAATTGACCCCGCCCATCCAGGCTCACCTACTCCCTTTTTACTTGAGTGACTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGATGATCACCAGGTGAATGTGAATGTGCGCCAATCGGAGACAACTCCCTTTGTGTCACGCCCCTATAACATACCAGCGCCTCCTGATTTACAAGGAATACAGAATTGCGTCTCAGTGGAACCGAGCATCATAGAAGGAAATCGCTCAGGCTCCATGACCGATCAGCTCTCGAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCTGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCCAAACGCTCTCGCAAGAAGATTTCTCACAGACCCACTATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCCAATAGGTCCCATTTTCACGTCGACCCTCTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAAGCGTTGCTTTCGTTGCCACAGGAGGAAGAGCGAGTGAATAGGATTCATATTGACATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGATCGTCTTCCTCGCAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAAGCTTCGACTAATGGTTTCGCCCCCGATAATGTAATTGGTGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACCTAGTTAGATTGCTTGGATACTGTGCTGAAGGGGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACTTGGGAGATTAGAATGAACGTAATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAAGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGTTATATTACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCGAGTACAGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGGAACCCTGTTGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAGAGAATGGTCAGTAACCGTAATCCAGAGGGTGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGCCATATTATCCATATGCTTGAAGCTGAAGATGCTAACTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAATTCACATTCAGACAATGTCAATGATGGTTTAAATGAAAGGCAGGCGACAGAATTAGGTGGCAGCAACGCAGATGAACTCAGTACTCGACAACGAGATACATGA 2649 46.55 MDHSIPNNCDRNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHFSLLSPSPSPSPSIFSELTCNIRAFTPPTHNIPPPYGPPNAVPDEISAVDSSSSAILHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALAEELPTKPNTRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNVETAFELTPPIQAHLLPFYLSDSSKSKEICSRDVLRDDHQVNVNVRQSETTPFVSRPYNIPAPPDLQGIQNCVSVEPSIIEGNRSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRIDHALAQNQEHKPNRSHFHVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIDIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNVILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSDNVNDGLNERQATELGGSNADELSTRQRDT 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7903717 7911635 + Lsi01G009680.1 Lsi01g00968 653626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00968 882 PANTHER RECEPTOR-LIKE KINASE PLANT 376 872 - -
Lsi01g00968 882 PANTHER OS01G0323000 PROTEIN 376 872 - -
Lsi01g00968 882 ProSiteProfiles Protein kinase domain profile. 559 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00968 882 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Lsi01g00968 882 Gene3D Phosphorylase Kinase; domain 1 540 634 - -
Lsi01g00968 882 Pfam Helix-loop-helix DNA-binding domain 173 219 IPR011598 GO:0046983
Lsi01g00968 882 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 229 IPR036638 GO:0046983
Lsi01g00968 882 Coils Coil 208 228 - -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 165 181 - -
Lsi01g00968 882 CDD bHLH_AtPIF_like 169 231 - -
Lsi01g00968 882 Gene3D Transferase(Phosphotransferase) domain 1 635 845 - -
Lsi01g00968 882 SUPERFAMILY Protein kinase-like (PK-like) 540 831 IPR011009 -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 116 181 - -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 838 882 - -
Lsi01g00968 882 Pfam Protein kinase domain 562 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00968 882 MobiDBLite consensus disorder prediction 853 875 - -
Lsi01g00968 882 Gene3D - 164 228 IPR036638 GO:0046983
Lsi01g00968 882 SMART finulus 175 224 IPR011598 GO:0046983
Lsi01g00968 882 MobiDBLite consensus disorder prediction 838 852 - -
Lsi01g00968 882 ProSitePatterns Protein kinases ATP-binding region signature. 565 587 IPR017441 GO:0005524
Lsi01g00968 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672|GO:0006468
Lsi01g00968 882 CDD STKc_IRAK 565 831 - -
Lsi01g00968 882 SMART serkin_6 559 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00968 - - - cmax:111497422 1441.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00968 Lsi-Chr1:7903717 Lsi05g02060 Lsi-Chr5:27511818 0 dispersed
Lsi02g02044 Lsi-Chr2:26581753 Lsi01g00968 Lsi-Chr1:7903717 3.73E-30 dispersed
Lsi08g00917 Lsi-Chr8:17555044 Lsi01g00968 Lsi-Chr1:7903717 1.69E-08 dispersed
Lsi08g00918 Lsi-Chr8:17562810 Lsi01g00968 Lsi-Chr1:7903717 1.73E-08 dispersed
Lsi05g00923 Lsi-Chr5:16390963 Lsi01g00968 Lsi-Chr1:7903717 3.41E-09 transposed
Lsi01g00968 Lsi-Chr1:7903717 Lsi08g01486 Lsi-Chr8:23012388 1.34E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1055 Blo04g01053 . . . . . . . Cmo03g00987 Cmo07g00534 . . . . . Cpe19g00629 . Bhi03g00937 . . . . . . Cla01g01656 Cam01g1737 Cec04g1382 . Clacu01g1763 Cmu01g1643 Cre04g1318 . . . . Lsi01g00968 Csa06g02951 . Cme08g00583 . . . . . . . . . . . Cma03g00802 Cma07g00695 Car03g00875 Car07g00690 Cpe10g00442 . . . . . . . . . . . . . . . . . Chy02g00903 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01719 . 46 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 59.4 3.0e-40 162.5
Lsi05g00630 . 63 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 79.0 2.0e-53 206.1
Lsi10g00160 . 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.7 5.3e-46 181.4
Lsi02g00656 . 51 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.2 8.2e-39 157.5
Lsi03g01333 . 2 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 51.5 9.2e-52 200.7
Lsi04g01698 CCT,ECH 25 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.9 5.6e-44 175.6
Lsi05g00449 . 42 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.8 8.1e-118 421.0
Lsi02g00527 . 51 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.4 4.8e-102 368.6
Lsi10g00463 . 40 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.8 7.4e-51 198.0
Lsi01g00601 . 80 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.2 8.5e-47 184.5
Lsi05g02130 . 14 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.7 5.1e-154 541.6
Lsi02g00525 CCT 161 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.7 1.6e-41 166.8
Lsi09g01503 . 38 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 60.6 8.4e-44 174.1
Lsi05g01413 . 41 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.4 1.8e-38 156.4
Lsi09g01503 . 36 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 58.0 5.6e-45 177.9
Lsi05g01413 . 39 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 50.6 1.5e-37 153.3
Lsi07g00339 . 6 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 59.2 2.9e-43 171.8
Lsi07g00339 . 4 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 67.4 2.6e-41 165.2
Lsi07g01119 . 374 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.6 1.1e-61 235.0
Lsi01g00968 . 124 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 58.8 2.6e-42 169.9
Lsi03g00644 . 163 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.1 6.3e-45 178.3
Lsi05g00991 . 1 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 50.8 2.2e-131 466.1
Lsi04g00293 . 58 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.0 5.0e-75 278.5
Lsi09g01016 . 16 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.3 9.8e-71 264.2
Lsi06g01209 . 26 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.4 5.6e-53 204.5
Lsi04g01550 CCT,ECH 16 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.1 1.4e-46 183.3
Lsi10g00560 . 44 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.3 1.2e-42 170.2
Lsi08g01480 CCT,ECH 105 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.1 2.0e-37 152.9
Lsi01g01144 . 22 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 56.9 6.5e-37 151.0
Lsi01g01144 . 78 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.7 2.6e-42 169.1
Lsi05g01454 . 1 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.6 3.1e-50 195.3
Lsi04g01455 CCT 206 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 53.3 7.2e-45 178.7
Lsi07g01198 . 66 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 53.3 1.0e-146 517.3
Lsi04g01492 CCT,ECH 243 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 81.9 1.3e-37 153.7
Lsi11g01112 . 188 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36540 77.6 8.1e-39 157.9
Lsi02g02245 . 74 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.4 8.6e-95 343.6
Lsi06g00191 . 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 65.3 1.0e-63 240.4
Lsi06g01169 . 159 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 55.9 1.4e-44 176.8
Lsi11g00401 . 214 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 56.3 1.8e-39 159.8
Lsi07g01198 . 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.9 1.4e-165 580.1
Lsi01g00831 . 141 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.4 5.1e-60 228.4
Lsi08g01047 CCT 164 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.2 1.8e-52 203.4
Lsi04g02300 CCT 159 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 57.6 6.5e-47 184.9
Lsi11g01112 . 194 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 85.3 1.4e-39 161.0
Lsi09g00778 . 334 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 82.5 1.2e-38 157.9
Lsi04g00328 . 361 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 80.4 1.0e-37 154.8
Lsi11g01112 . 181 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 52.2 1.6e-43 173.7
Lsi05g01353 . 263 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.2 4.0e-39 159.1
Lsi09g00778 . 335 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 78.5 1.4e-36 150.6
Lsi04g00328 . 362 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 70.3 1.4e-36 150.6
Lsi11g01112 . 175 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 79.1 2.6e-39 159.8
Lsi06g01169 . 203 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.7 5.4e-65 244.6
Lsi11g00401 . 212 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 59.0 1.5e-59 226.5
Lsi06g00191 . 137 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.3 2.1e-45 179.5
Lsi02g02245 . 139 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.1 4.5e-43 171.8
Lsi06g01169 . 205 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 60.8 2.7e-57 219.5
Lsi11g00401 . 218 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.3 4.0e-53 205.7
Lsi02g02245 . 150 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.1 1.1e-42 171.0
Lsi06g00191 . 148 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 63.7 1.9e-42 170.2
Lsi02g02245 . 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 62.2 1.3e-90 330.1
Lsi06g00191 . 129 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 64.5 1.7e-58 223.4
Lsi06g01169 . 201 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 57.5 7.8e-43 171.4
Lsi04g00328 . 352 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 61.6 3.9e-43 172.6
Lsi09g00778 . 325 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 77.6 6.2e-41 165.2
Lsi08g01550 CCT 193 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 57.7 8.3e-38 154.8
Lsi05g01353 . 333 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G26260 62.3 6.2e-39 158.7
Lsi02g02133 . 285 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 52.3 5.1e-43 172.2
Lsi09g00778 . 325 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 53.8 5.3e-40 162.2
Lsi11g01112 . 181 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 65.0 1.0e-38 157.9
Lsi04g01455 CCT 214 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 55.9 2.5e-37 153.3
Lsi04g00328 . 355 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 50.6 1.2e-36 151.0
Lsi11g01112 . 183 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 75.7 6.2e-38 155.6
Lsi04g00328 . 355 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 76.5 2.4e-37 153.7
Lsi09g00778 . 307 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 65.9 6.9e-37 152.1
Lsi06g01503 . 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.5 4.4e-55 211.8
Lsi08g00018 . 15 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 56.3 2.9e-52 202.2
Lsi08g00018 . 15 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 56.4 1.5e-49 193.4
Lsi06g01169 . 169 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 65.4 9.1e-59 224.2
Lsi11g00401 . 212 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 63.4 7.0e-51 198.0
Lsi06g00191 . 135 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 59.2 2.2e-44 176.4
Lsi02g02245 . 132 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 53.5 9.1e-43 171.0
Lsi03g00573 CCT,ECH 237 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.2 5.6e-39 158.7
Lsi04g01492 CCT,ECH 245 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.0 2.8e-38 156.4
Lsi08g01523 CCT,ECH 242 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 88.4 1.8e-37 153.7
Lsi02g02960 . 197 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.7 1.1e-64 244.2
Lsi04g01550 CCT,ECH 21 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 60.0 4.4e-45 178.3
Lsi10g00560 . 68 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.4 8.6e-41 164.1
Lsi08g01480 CCT,ECH 108 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.9 6.8e-38 154.5
Lsi08g00990 . 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.9 2.8e-55 212.6
Lsi05g01835 . 64 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.0 1.0e-92 337.4
Lsi05g00991 . 1 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 50.8 2.2e-131 466.1
Lsi07g01198 . 66 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G46760 53.3 1.0e-146 517.3
Lsi07g01198 . 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.9 1.4e-165 580.1
Lsi02g02245 . 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 62.2 1.3e-90 330.1
Lsi06g00191 . 129 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 64.5 1.7e-58 223.4
Lsi06g01169 . 201 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G03040 57.5 7.8e-43 171.4
Lsi05g02130 . 14 610 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.7 5.1e-154 541.6
Lsi01g00968 . 124 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 58.8 2.6e-42 169.9
Lsi03g00644 . 163 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 58.1 6.3e-45 178.3
Lsi04g00293 . 58 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.0 5.0e-75 278.5
Lsi09g01016 . 16 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.3 9.8e-71 264.2
Lsi06g01209 . 26 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.4 5.6e-53 204.5
Lsi04g01550 CCT,ECH 16 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.1 1.4e-46 183.3
Lsi10g00560 . 44 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 72.3 1.2e-42 170.2
Lsi08g01480 CCT,ECH 105 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 81.1 2.0e-37 152.9
Lsi01g01144 . 22 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 56.9 6.5e-37 151.0
Lsi01g01144 . 78 174 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 89.7 2.6e-42 169.1
Lsi05g01454 . 1 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.6 3.1e-50 195.3
Lsi04g01455 CCT 206 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 53.3 7.2e-45 178.7
Lsi04g01492 CCT,ECH 243 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 81.9 1.3e-37 153.7
Lsi11g01112 . 188 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36540 77.6 8.1e-39 157.9
Lsi02g02245 . 74 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.4 8.6e-95 343.6
Lsi06g00191 . 96 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 65.3 1.0e-63 240.4
Lsi06g01169 . 159 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 55.9 1.4e-44 176.8
Lsi11g00401 . 214 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 56.3 1.8e-39 159.8
Lsi01g00831 . 141 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 59.4 5.1e-60 228.4
Lsi08g01047 CCT 164 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.2 1.8e-52 203.4
Lsi04g02300 CCT 159 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 57.6 6.5e-47 184.9
Lsi11g01112 . 194 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 85.3 1.4e-39 161.0
Lsi09g00778 . 334 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 82.5 1.2e-38 157.9
Lsi04g00328 . 361 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 80.4 1.0e-37 154.8
Lsi11g01112 . 181 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 52.2 1.6e-43 173.7
Lsi05g01353 . 263 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.2 4.0e-39 159.1
Lsi09g00778 . 335 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 78.5 1.4e-36 150.6
Lsi04g00328 . 362 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 70.3 1.4e-36 150.6
Lsi11g01112 . 175 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G18300 79.1 2.6e-39 159.8
Lsi06g01169 . 203 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.7 5.4e-65 244.6
Lsi11g00401 . 212 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 59.0 1.5e-59 226.5
Lsi06g00191 . 137 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.3 2.1e-45 179.5
Lsi02g02245 . 139 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.1 4.5e-43 171.8
Lsi06g01169 . 205 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 60.8 2.7e-57 219.5
Lsi11g00401 . 218 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.3 4.0e-53 205.7
Lsi02g02245 . 150 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 59.1 1.1e-42 171.0
Lsi06g00191 . 148 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 63.7 1.9e-42 170.2
Lsi04g00328 . 352 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 61.6 3.9e-43 172.6
Lsi09g00778 . 325 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 77.6 6.2e-41 165.2
Lsi08g01550 CCT 193 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 57.7 8.3e-38 154.8
Lsi05g01353 . 333 477 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G26260 62.3 6.2e-39 158.7
Lsi02g02133 . 285 494 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 52.3 5.1e-43 172.2
Lsi09g00778 . 325 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 53.8 5.3e-40 162.2
Lsi11g01112 . 181 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 65.0 1.0e-38 157.9
Lsi04g01455 CCT 214 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 55.9 2.5e-37 153.3
Lsi04g00328 . 355 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G23690 50.6 1.2e-36 151.0
Lsi11g01112 . 183 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 75.7 6.2e-38 155.6
Lsi04g00328 . 355 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 76.5 2.4e-37 153.7
Lsi09g00778 . 307 428 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 65.9 6.9e-37 152.1
Lsi06g01503 . 1 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.5 4.4e-55 211.8
Lsi08g00018 . 15 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G35460 56.3 2.9e-52 202.2
Lsi08g00018 . 15 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 56.4 1.5e-49 193.4
Lsi06g01169 . 169 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 65.4 9.1e-59 224.2
Lsi11g00401 . 212 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 63.4 7.0e-51 198.0
Lsi06g00191 . 135 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 59.2 2.2e-44 176.4
Lsi02g02245 . 132 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G58010 53.5 9.1e-43 171.0
Lsi03g00573 CCT,ECH 237 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.2 5.6e-39 158.7
Lsi04g01492 CCT,ECH 245 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 94.0 2.8e-38 156.4
Lsi08g01523 CCT,ECH 242 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 88.4 1.8e-37 153.7
Lsi02g02960 . 197 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.7 1.1e-64 244.2
Lsi04g01550 CCT,ECH 21 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 60.0 4.4e-45 178.3
Lsi10g00560 . 68 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 87.4 8.6e-41 164.1
Lsi08g01480 CCT,ECH 108 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 85.9 6.8e-38 154.5
Lsi08g00990 . 2 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.9 2.8e-55 212.6
Lsi05g01835 . 64 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.0 1.0e-92 337.4
Lsi05g01719 . 46 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 59.4 3.0e-40 162.5
Lsi05g00630 . 63 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 79.0 2.0e-53 206.1
Lsi10g00160 . 4 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 57.7 5.3e-46 181.4
Lsi02g00656 . 51 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 61.2 8.2e-39 157.5
Lsi03g01333 . 2 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 51.5 9.2e-52 200.7
Lsi04g01698 CCT,ECH 25 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 55.9 5.6e-44 175.6
Lsi05g00449 . 42 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.8 8.1e-118 421.0
Lsi02g00527 . 51 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.4 4.8e-102 368.6
Lsi10g00463 . 40 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.8 7.4e-51 198.0
Lsi01g00601 . 80 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 58.2 8.5e-47 184.5
Lsi02g00525 CCT 161 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 66.7 1.6e-41 166.8
Lsi09g01503 . 38 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 60.6 8.4e-44 174.1
Lsi05g01413 . 41 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 55.4 1.8e-38 156.4
Lsi09g01503 . 36 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 58.0 5.6e-45 177.9
Lsi05g01413 . 39 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 50.6 1.5e-37 153.3
Lsi07g00339 . 6 150 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 59.2 2.9e-43 171.8
Lsi07g00339 . 4 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 67.4 2.6e-41 165.2
Lsi07g01119 . 374 603 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.6 1.1e-61 235.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000807 2 2 2 3 1 1 3 1 0 3 2 1 5 3 0 4 1 2 4 1 3 1 0 0 0 3 0 1 0 3 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24639 PF00069 Pkinase 3.60E-46 CL0016 Lsi TF
83270 PF00069 Pkinase 3.60E-46 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g00968 Lsi_Chr01 FPKM 40.37785 48.295883 46.632908 46.208488 58.285233 58.213066 56.366257 47.857014 46.717926 49.63847