Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00968 ATGGACCATTCCATTCCCAACAACTGCGATCGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTTCTCTCTCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACATTCCCCCTCCTTACGGGCCGCCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCATCGTCCGCTATATTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGCTGAAGAGCTCCCTACAAAGCCCAATACTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATCTGTCTGAAAAGAGAAGGAGGAGCAGAATAAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCAAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAACTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGGAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTGCATTTGAATTGACCCCGCCCATCCAGGCTCACCTACTCCCTTTTTACTTGAGTGACTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGATGATCACCAGGTGAATGTGAATGTGCGCCAATCGGAGACAACTCCCTTTGTGTCACGCCCCTATAACATACCAGCGCCTCCTGATTTACAAGGAATACAGAATTGCGTCTCAGTGGAACCGAGCATCATAGAAGGAAATCGCTCAGGCTCCATGACCGATCAGCTCTCGAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCTGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCCAAACGCTCTCGCAAGAAGATTTCTCACAGACCCACTATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCCAATAGGTCCCATTTTCACGTCGACCCTCTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAAGCGTTGCTTTCGTTGCCACAGGAGGAAGAGCGAGTGAATAGGATTCATATTGACATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGATCGTCTTCCTCGCAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAAGCTTCGACTAATGGTTTCGCCCCCGATAATGTAATTGGTGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACCTAGTTAGATTGCTTGGATACTGTGCTGAAGGGGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACTTGGGAGATTAGAATGAACGTAATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAAGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGTTATATTACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCGAGTACAGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGGAACCCTGTTGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAGAGAATGGTCAGTAACCGTAATCCAGAGGGTGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGCCATATTATCCATATGCTTGAAGCTGAAGATGCTAACTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAATTCACATTCAGACAATGTCAATGATGGTTTAAATGAAAGGCAGGCGACAGAATTAGGTGGCAGCAACGCAGATGAACTCAGTACTCGACAACGAGATACATGA 2649 46.55 MDHSIPNNCDRNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHFSLLSPSPSPSPSIFSELTCNIRAFTPPTHNIPPPYGPPNAVPDEISAVDSSSSAILHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALAEELPTKPNTRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNVETAFELTPPIQAHLLPFYLSDSSKSKEICSRDVLRDDHQVNVNVRQSETTPFVSRPYNIPAPPDLQGIQNCVSVEPSIIEGNRSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRIDHALAQNQEHKPNRSHFHVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIDIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNVILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSDNVNDGLNERQATELGGSNADELSTRQRDT 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7903717 7911635 + Lsi01G009680.1 Lsi01g00968 653626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00968 882 PANTHER RECEPTOR-LIKE KINASE PLANT 376 872 - -
Lsi01g00968 882 PANTHER OS01G0323000 PROTEIN 376 872 - -
Lsi01g00968 882 ProSiteProfiles Protein kinase domain profile. 559 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00968 882 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Lsi01g00968 882 Gene3D Phosphorylase Kinase; domain 1 540 634 - -
Lsi01g00968 882 Pfam Helix-loop-helix DNA-binding domain 173 219 IPR011598 GO:0046983
Lsi01g00968 882 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 229 IPR036638 GO:0046983
Lsi01g00968 882 Coils Coil 208 228 - -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 165 181 - -
Lsi01g00968 882 CDD bHLH_AtPIF_like 169 231 - -
Lsi01g00968 882 Gene3D Transferase(Phosphotransferase) domain 1 635 845 - -
Lsi01g00968 882 SUPERFAMILY Protein kinase-like (PK-like) 540 831 IPR011009 -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 116 181 - -
Lsi01g00968 882 MobiDBLite consensus disorder prediction 838 882 - -
Lsi01g00968 882 Pfam Protein kinase domain 562 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00968 882 MobiDBLite consensus disorder prediction 853 875 - -
Lsi01g00968 882 Gene3D - 164 228 IPR036638 GO:0046983
Lsi01g00968 882 SMART finulus 175 224 IPR011598 GO:0046983
Lsi01g00968 882 MobiDBLite consensus disorder prediction 838 852 - -
Lsi01g00968 882 ProSitePatterns Protein kinases ATP-binding region signature. 565 587 IPR017441 GO:0005524
Lsi01g00968 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672|GO:0006468
Lsi01g00968 882 CDD STKc_IRAK 565 831 - -
Lsi01g00968 882 SMART serkin_6 559 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00968 Lsi-Chr1:7903717 Lsi05g02060 Lsi-Chr5:27511818 0 dispersed
Lsi02g02044 Lsi-Chr2:26581753 Lsi01g00968 Lsi-Chr1:7903717 3.73E-30 dispersed
Lsi08g00917 Lsi-Chr8:17555044 Lsi01g00968 Lsi-Chr1:7903717 1.69E-08 dispersed
Lsi08g00918 Lsi-Chr8:17562810 Lsi01g00968 Lsi-Chr1:7903717 1.73E-08 dispersed
Lsi05g00923 Lsi-Chr5:16390963 Lsi01g00968 Lsi-Chr1:7903717 3.41E-09 transposed
Lsi01g00968 Lsi-Chr1:7903717 Lsi08g01486 Lsi-Chr8:23012388 1.34E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24639 PF00069 Pkinase 3.60E-46 CL0016 Lsi TF
83270 PF00069 Pkinase 3.60E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00968 - - cmax:111497422 1441.02