Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00968 | ATGGACCATTCCATTCCCAACAACTGCGATCGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTTCTCTCTCCTCTCTCCCTCTCCCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACATTCCCCCTCCTTACGGGCCGCCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCATCGTCCGCTATATTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGCTGAAGAGCTCCCTACAAAGCCCAATACTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATCTGTCTGAAAAGAGAAGGAGGAGCAGAATAAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCAAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAACTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGGAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCAAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTGCATTTGAATTGACCCCGCCCATCCAGGCTCACCTACTCCCTTTTTACTTGAGTGACTCCTCCAAGTCTAAGGAGATTTGCAGCAGAGATGTACTGCGAGATGATCACCAGGTGAATGTGAATGTGCGCCAATCGGAGACAACTCCCTTTGTGTCACGCCCCTATAACATACCAGCGCCTCCTGATTTACAAGGAATACAGAATTGCGTCTCAGTGGAACCGAGCATCATAGAAGGAAATCGCTCAGGCTCCATGACCGATCAGCTCTCGAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCTGCTTTTGTGCTCTTTCTGTTTCTAATTTCTCTTTGGATTGCTTCCAAACGCTCTCGCAAGAAGATTTCTCACAGACCCACTATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGATCATGCCCTCGCTCAAAACCAAGAACATAAGCCCAATAGGTCCCATTTTCACGTCGACCCTCTTCCGGAGCCGGAACCAATCCCTGGAATTGAGCGGCAAGCGTTGCTTTCGTTGCCACAGGAGGAAGAGCGAGTGAATAGGATTCATATTGACATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTTGGTCGATCGTCTTCCTCGCAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAAGCTTCGACTAATGGTTTCGCCCCCGATAATGTAATTGGTGAGGGTGGGTATGGAATTGTTTACCATGGCATATTGGAAGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACCTAGTTAGATTGCTTGGATACTGTGCTGAAGGGGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACTTGGGAGATTAGAATGAACGTAATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAAGTTGTTCACCGGGATATCAAATCAAGCAATATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGTTATATTACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCGAGTACAGGAATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGACGGAACCCTGTTGATTATAGTCGTCCTCCAGATGAGGTGAACTTGATCGATTGGCTTAAGAGAATGGTCAGTAACCGTAATCCAGAGGGTGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGCCATATTATCCATATGCTTGAAGCTGAAGATGCTAACTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAATTCACATTCAGACAATGTCAATGATGGTTTAAATGAAAGGCAGGCGACAGAATTAGGTGGCAGCAACGCAGATGAACTCAGTACTCGACAACGAGATACATGA | 2649 | 46.55 | MDHSIPNNCDRNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHFSLLSPSPSPSPSIFSELTCNIRAFTPPTHNIPPPYGPPNAVPDEISAVDSSSSAILHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALAEELPTKPNTRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNVETAFELTPPIQAHLLPFYLSDSSKSKEICSRDVLRDDHQVNVNVRQSETTPFVSRPYNIPAPPDLQGIQNCVSVEPSIIEGNRSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISHRPTIPIVSKEIQEIRIDHALAQNQEHKPNRSHFHVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIDIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNVILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSDNVNDGLNERQATELGGSNADELSTRQRDT | 882 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7903717 | 7911635 | + | Lsi01G009680.1 | Lsi01g00968 | 653626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00968 | 882 | PANTHER | RECEPTOR-LIKE KINASE PLANT | 376 | 872 | - | - | |
Lsi01g00968 | 882 | PANTHER | OS01G0323000 PROTEIN | 376 | 872 | - | - | |
Lsi01g00968 | 882 | ProSiteProfiles | Protein kinase domain profile. | 559 | 837 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00968 | 882 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 169 | 218 | IPR011598 | GO:0046983 | |
Lsi01g00968 | 882 | Gene3D | Phosphorylase Kinase; domain 1 | 540 | 634 | - | - | |
Lsi01g00968 | 882 | Pfam | Helix-loop-helix DNA-binding domain | 173 | 219 | IPR011598 | GO:0046983 | |
Lsi01g00968 | 882 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 166 | 229 | IPR036638 | GO:0046983 | |
Lsi01g00968 | 882 | Coils | Coil | 208 | 228 | - | - | |
Lsi01g00968 | 882 | MobiDBLite | consensus disorder prediction | 165 | 181 | - | - | |
Lsi01g00968 | 882 | CDD | bHLH_AtPIF_like | 169 | 231 | - | - | |
Lsi01g00968 | 882 | Gene3D | Transferase(Phosphotransferase) domain 1 | 635 | 845 | - | - | |
Lsi01g00968 | 882 | SUPERFAMILY | Protein kinase-like (PK-like) | 540 | 831 | IPR011009 | - | |
Lsi01g00968 | 882 | MobiDBLite | consensus disorder prediction | 116 | 181 | - | - | |
Lsi01g00968 | 882 | MobiDBLite | consensus disorder prediction | 838 | 882 | - | - | |
Lsi01g00968 | 882 | Pfam | Protein kinase domain | 562 | 828 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00968 | 882 | MobiDBLite | consensus disorder prediction | 853 | 875 | - | - | |
Lsi01g00968 | 882 | Gene3D | - | 164 | 228 | IPR036638 | GO:0046983 | |
Lsi01g00968 | 882 | SMART | finulus | 175 | 224 | IPR011598 | GO:0046983 | |
Lsi01g00968 | 882 | MobiDBLite | consensus disorder prediction | 838 | 852 | - | - | |
Lsi01g00968 | 882 | ProSitePatterns | Protein kinases ATP-binding region signature. | 565 | 587 | IPR017441 | GO:0005524 | |
Lsi01g00968 | 882 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 681 | 693 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi01g00968 | 882 | CDD | STKc_IRAK | 565 | 831 | - | - | |
Lsi01g00968 | 882 | SMART | serkin_6 | 559 | 830 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00968 | Lsi-Chr1:7903717 | Lsi05g02060 | Lsi-Chr5:27511818 | 0 | dispersed | |
Lsi02g02044 | Lsi-Chr2:26581753 | Lsi01g00968 | Lsi-Chr1:7903717 | 3.73E-30 | dispersed | |
Lsi08g00917 | Lsi-Chr8:17555044 | Lsi01g00968 | Lsi-Chr1:7903717 | 1.69E-08 | dispersed | |
Lsi08g00918 | Lsi-Chr8:17562810 | Lsi01g00968 | Lsi-Chr1:7903717 | 1.73E-08 | dispersed | |
Lsi05g00923 | Lsi-Chr5:16390963 | Lsi01g00968 | Lsi-Chr1:7903717 | 3.41E-09 | transposed | |
Lsi01g00968 | Lsi-Chr1:7903717 | Lsi08g01486 | Lsi-Chr8:23012388 | 1.34E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24639 | PF00069 | Pkinase | 3.60E-46 | CL0016 | Lsi | TF | |
83270 | PF00069 | Pkinase | 3.60E-46 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00968 | - | - | cmax:111497422 | 1441.02 |