Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00972 ATGGAGTGGGTTCGAGGAGATGAGATTGGGCATGGAAGTTTTGCCACCATCAATTTCGCTACGCCTTCCAACACTTATTGTGGAAATCAATTTCCTCCATTAATGGCGGTTAAATCATCTGCAGCTGTTTGCTCTGCCTCGCTCAAGAACGAGAAGCAAGTTTTGGATCTTCTGGGTGATGATTGCCCACAAATTATTCGGTGTTTTGGGGAGAGTTGCAGTTACGAGAACGGCGAGGAGCTTTACAATTTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCCGATAGAATACAGAGCCGCGGTGGTCGGATACCGGAATTTGAGGTTAGACGGTATACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTGATGACGGTGATGCTAAGATTGCGGATTTTGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGAAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTGAACGATAACGAGTACGAGTCGCCGTGTGACATATGGGCCGTCGGATGCGCGGTGATTGAGATGTTGACAGGAAAGCCCGCGTGGAATTGCCGGCAGGGATCCAACATCTATTCTCTGTTACTCAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCCGAAGAAGGGAAAGATTTTCTCGGAAAATGCTTGGTGAAGGATCCTGCAAAGAGATGGACGGCCGATATGCTTCTGAAACACCCCTTTGTATCAGACTCCGGGCGCTCTGTTCCATTGACGACCATGGACGAACCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCATTCACAAGAGGCCGATCAGAGATTTGAGGAGGAATCAAATTGTTGGTTAAATTCGTCGTGTTCGTGGTTGTCTTGTCCGAAGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1071 48.09 MEWVRGDEIGHGSFATINFATPSNTYCGNQFPPLMAVKSSAAVCSASLKNEKQVLDLLGDDCPQIIRCFGESCSYENGEELYNLFLEYASGGSLADRIQSRGGRIPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFDDGDAKIADFGLSKKAGKNRAETGEEVGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVIEMLTGKPAWNCRQGSNIYSLLLKIGIGEELPEIPKDLSEEGKDFLGKCLVKDPAKRWTADMLLKHPFVSDSGRSVPLTTMDEPSTSPRCPFDFEDWASIHSQEADQRFEEESNCWLNSSCSWLSCPKERLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7933161 7934231 - Lsi01G009720.1 Lsi01g00972 653630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00972 356 CDD STKc_MAPKKK 2 273 - -
Lsi01g00972 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lsi01g00972 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 317 - -
Lsi01g00972 356 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00972 356 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Lsi01g00972 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00972 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Lsi01g00972 356 Gene3D Transferase(Phosphotransferase) domain 1 96 319 - -
Lsi01g00972 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Lsi01g00972 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00972 356 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 317 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00972 Lsi10g00532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00972 Lsi-Chr1:7933161 Lsi10g00114 Lsi-Chr10:1804629 5.72E-69 dispersed
Lsi02g02643 Lsi-Chr2:32857684 Lsi01g00972 Lsi-Chr1:7933161 1.80E-61 dispersed
Lsi02g02644 Lsi-Chr2:32861827 Lsi01g00972 Lsi-Chr1:7933161 5.11E-52 dispersed
Lsi11g00710 Lsi-Chr11:7543470 Lsi01g00972 Lsi-Chr1:7933161 1.34E-60 dispersed
Lsi01g01704 Lsi-Chr1:15675617 Lsi01g00972 Lsi-Chr1:7933161 1.02E-54 transposed
Lsi01g01721 Lsi-Chr1:15955867 Lsi01g00972 Lsi-Chr1:7933161 1.87E-12 transposed
Lsi01g01994 Lsi-Chr1:26696157 Lsi01g00972 Lsi-Chr1:7933161 7.87E-70 transposed
Lsi02g00835 Lsi-Chr2:7821701 Lsi01g00972 Lsi-Chr1:7933161 9.80E-62 transposed
Lsi02g02320 Lsi-Chr2:29820250 Lsi01g00972 Lsi-Chr1:7933161 9.89E-46 transposed
Lsi06g00463 Lsi-Chr6:5301403 Lsi01g00972 Lsi-Chr1:7933161 1.35E-15 transposed
Lsi06g00987 Lsi-Chr6:19885569 Lsi01g00972 Lsi-Chr1:7933161 4.50E-57 transposed
Lsi08g00439 Lsi-Chr8:11941307 Lsi01g00972 Lsi-Chr1:7933161 4.02E-67 transposed
Lsi09g00312 Lsi-Chr9:3209022 Lsi01g00972 Lsi-Chr1:7933161 2.15E-13 transposed
Lsi09g00594 Lsi-Chr9:6406861 Lsi01g00972 Lsi-Chr1:7933161 3.60E-20 transposed
Lsi01g00972 Lsi-Chr1:7933161 Lsi10g00532 Lsi-Chr10:7625178 2.11E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83271 PF00069 Pkinase 1.40E-53 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00972 - - bhj:120074166 677.552