Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00995 ATGAAGGATAACTCCTCTAAATATGTTGTTTTCTTGCTTATGAGCTTCTTTTTCTTGAATCATCTCCTTGTGTCCTCACAACTTGATTATAGGTTCTATGATGCCTCTTGTCCCAACCTAACAAGGATTATAAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTACGGCTTCATTTTCATGATTGCTTTGTCAACGGTTGTGATGGATCATTATTGCTTGATGACACTAGCACATTTAAGGGGGAGAAAAATGCATTGCCGAATATGAACTCAGTTCGAGGATATGAGGTCATTGATAATATAAAGGCTGTCTTAGAGAAAGTCTGCCCATGTGTTGTCTCATGTACTGATATAGTAACTCTAGCAGCTAGAGAGGCTGTCTACCTTGCTGGGGGACCTTTTTGGCAAATTCCACTTGGTCGCCGAGATGGCACGACAGCAAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTAGAGCCATTGGAGAATATCATTGCGAAATTCACTTCGAAAGGGCTTGATCTGAAGGATCTTGTTGCTCTCTCAGGTGCACACACTTTCGGATTTGCTCGTTGTATGATGTTCAAGCATAGGCTATTCAACTTTGACGGTGCTGGAAATCCTGATCCAGAACTCGACGTCATGCTGCGACAGAACTTACAGAGCAACTGTCCAAATCAAGATGACTCCAACAACAAATTTGCCCCCTTGGATGCCTACACGATCAACCGGTTTGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCTCTCATGAAAGATAATACAACTGCTTCTTTGGTGGTGAACTACAGCAGGTATCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGTATCCTTACAGGCCAAAATGGGGAAATTAGGAAGGATTGCAGGGTGGTGAACTAG 984 43.6 MKDNSSKYVVFLLMSFFFLNHLLVSSQLDYRFYDASCPNLTRIIRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFKGEKNALPNMNSVRGYEVIDNIKAVLEKVCPCVVSCTDIVTLAAREAVYLAGGPFWQIPLGRRDGTTASESEANQLPSPVEPLENIIAKFTSKGLDLKDLVALSGAHTFGFARCMMFKHRLFNFDGAGNPDPELDVMLRQNLQSNCPNQDDSNNKFAPLDAYTINRFDNVYYRNLVNKLGLLQSDQALMKDNTTASLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKDCRVVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8224675 8226617 - Lsi01G009950.1 Lsi01g00995 653653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00995 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lsi01g00995 327 Gene3D Peroxidase, domain 2 164 306 - -
Lsi01g00995 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Lsi01g00995 327 PANTHER PEROXIDASE 13 326 - -
Lsi01g00995 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Lsi01g00995 327 Gene3D - 31 327 - -
Lsi01g00995 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 Pfam Peroxidase 50 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi01g00995 327 PANTHER PEROXIDASE 72-RELATED 13 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00995 Lsi-Chr1:8224675 Lsi10g01475 Lsi-Chr10:18880440 3.20E-105 dispersed
Lsi06g00967 Lsi-Chr6:19619446 Lsi01g00995 Lsi-Chr1:8224675 2.66E-73 dispersed
Lsi02g01227 Lsi-Chr2:16095810 Lsi01g00995 Lsi-Chr1:8224675 6.04E-70 transposed
Lsi03g00276 Lsi-Chr3:3387980 Lsi01g00995 Lsi-Chr1:8224675 2.62E-85 transposed
Lsi08g01301 Lsi-Chr8:21380032 Lsi01g00995 Lsi-Chr1:8224675 1.06E-89 transposed
Lsi10g01503 Lsi-Chr10:19247609 Lsi01g00995 Lsi-Chr1:8224675 1.28E-80 transposed
Lsi01g00995 Lsi-Chr1:8224675 Lsi10g00311 Lsi-Chr10:4965744 2.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00995 K00430 - csv:101218459 632.869