Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g00997 ATGCGTTGGTTGCGTAACATTTCCTTTACCCCTTCTTCAATGGTGAGAATTTCTGGAACTGGCACAGGTGGTGAATCTCCAACCAGAAGAACTGCTACCAGAGGTTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCACAGGAAGCTTCGGAACCTTAGCGGACGTGAACGTGCTGCTACTGCTTTGTCTAAATGGTCCGATACTACGCCCGAGCCTATCTCCTTGTCGCGATCGTCGAGTACCTCTGATGACCATGCCGTACCCTTGCCGCTCCCGGAGGTTTCTCCCATATTTCAGCGTCGTGAAGGGATCTCCAATTCGAATTCTGCAGGAGAAAATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGTGGCGGGGACGACCGCGATGTAGATAGAGATAGAACTGCACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTAGCGCTCCGATTAAAAGTGGCTGTGTTAGTTATATACTTCTTGTCTCATTCTTGTTTACTGAGGATGCTGTATGGTGTGGTCTTATTGATACGCTTTGTTGTTTGGACAACGTTGATATTAAGAAAGAAGATCAGATTGAGACTAGGTCGTCTGGGAGGGCGAATCAAGATGCAAGAGGACATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATTATGTGGCTCCAGTAGGAAATCAAGGCTGGTCTGCACCTGAGCTGCCAAATTTCCCTTCTGTGGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATTGCTCCACTCTTAGTTCTGACAGTTCTCCCATGCATAGCCCAACAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGACCTACATCTCCATTGCACACCAAGATTTCCCATGAAACACATGCTGGACGTCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCTCCTAGTCCTGGAGGGCCAATGCCTTCAGCATCAATCCCAACAATGCCTTCAGCATCAACCTCTATGCCTCTACCATCAACCCCTGTGCCTTCACCATCAATTCCAATGCCTTCAGCATCATCCTCAATGGCTCTACCATCAACCCCAATGGCTTCACCATCATCCCCAATTACACAAGCAAACACTAAAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATCGGCCGGGGCACATTCGGAAGTGTGTATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCAAAGTCAGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTATTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTACGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTCGGCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTCGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCCGTGATGCAGAAAGATAACACCCCTGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATCGAAATGTTCACTGGAAAACCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAGAGAAACCCCGCCAATGCCTGAATCATTATCATACGAAGGCAGAGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACGGCTGCAATGCTGCTTGAACATCCGTTCATGAAAAACTTGCAGCATCCAGATACTTCATCTTGCTCTCCGGCTGTTACTGGAGCAAGTTTGATGGATAAATGCTATAGCCTAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTCCAAGGGAAAGTTAGCGGCCGAGAGGCAAGAGTTGCTTTTTCCCTTGCTCTCCAGTTCTCATTTTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAAGCTCTTCCAATACTGTCTCCTCCGCGCTCAGTTCCCAATGTGCATCATCTCGGTTCCCCTACAAATGCGGTCGGCGTTGTAAATCAAACCAATAAGAAGAACCATACACTAATATTATAG 2520 46.47 MRWLRNISFTPSSMVRISGTGTGGESPTRRTATRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERAATALSKWSDTTPEPISLSRSSSTSDDHAVPLPLPEVSPIFQRREGISNSNSAGENGDCPLPSPKGWRGRGGDDRDVDRDRTAPPHKIGGAASPSAPIKSGCVSYILLVSFLFTEDAVWCGLIDTLCCLDNVDIKKEDQIETRSSGRANQDARGHPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHYVAPVGNQGWSAPELPNFPSVAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSDSSPMHSPTGRSPHRDPRSPTGPTSPLHTKISHETHAGRREGSGHVSVHPLPLPPSPGGPMPSASIPTMPSASTSMPLPSTPVPSPSIPMPSASSSMALPSTPMASPSSPITQANTKTESISMKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNTPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRETPPMPESLSYEGRDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDTSSCSPAVTGASLMDKCYSLSKQYSSKFDQSSMLPSSQNSKGKLAAERQELLFPLLSSSHFVIGPLSHHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNAVGVVNQTNKKNHTLIL 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8231330 8236258 - Lsi01G009970.1 Lsi01g00997 653655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g00997 839 MobiDBLite consensus disorder prediction 64 161 - -
Lsi01g00997 839 Gene3D Transferase(Phosphotransferase) domain 1 441 736 - -
Lsi01g00997 839 SMART serkin_6 445 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00997 839 MobiDBLite consensus disorder prediction 14 30 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 72 95 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 368 382 - -
Lsi01g00997 839 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 807 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 135 152 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 110 124 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 14 38 - -
Lsi01g00997 839 ProSitePatterns Protein kinases ATP-binding region signature. 451 474 IPR017441 GO:0005524
Lsi01g00997 839 MobiDBLite consensus disorder prediction 206 255 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 408 440 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 239 255 - -
Lsi01g00997 839 MobiDBLite consensus disorder prediction 317 440 - -
Lsi01g00997 839 Pfam Protein kinase domain 446 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00997 839 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 807 - -
Lsi01g00997 839 SUPERFAMILY Protein kinase-like (PK-like) 427 748 IPR011009 -
Lsi01g00997 839 ProSiteProfiles Protein kinase domain profile. 445 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi01g00997 839 MobiDBLite consensus disorder prediction 206 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00997 Lsi-Chr1:8231330 Lsi05g01214 Lsi-Chr5:20005153 2.92E-105 dispersed
Lsi10g01097 Lsi-Chr10:15228376 Lsi01g00997 Lsi-Chr1:8231330 2.54E-14 dispersed
Lsi03g01161 Lsi-Chr3:21951256 Lsi01g00997 Lsi-Chr1:8231330 2.04E-34 transposed
Lsi04g00019 Lsi-Chr4:255555 Lsi01g00997 Lsi-Chr1:8231330 9.08E-12 transposed
Lsi09g00980 Lsi-Chr9:13093744 Lsi01g00997 Lsi-Chr1:8231330 2.41E-35 transposed
Lsi01g00997 Lsi-Chr1:8231330 Lsi08g01440 Lsi-Chr8:22594837 2.34E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83273 PF00069 Pkinase 2.80E-68 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g00997 - - cmo:103484760 1299.65