Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi01g00997 | ATGCGTTGGTTGCGTAACATTTCCTTTACCCCTTCTTCAATGGTGAGAATTTCTGGAACTGGCACAGGTGGTGAATCTCCAACCAGAAGAACTGCTACCAGAGGTTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCACAGGAAGCTTCGGAACCTTAGCGGACGTGAACGTGCTGCTACTGCTTTGTCTAAATGGTCCGATACTACGCCCGAGCCTATCTCCTTGTCGCGATCGTCGAGTACCTCTGATGACCATGCCGTACCCTTGCCGCTCCCGGAGGTTTCTCCCATATTTCAGCGTCGTGAAGGGATCTCCAATTCGAATTCTGCAGGAGAAAATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGTGGCGGGGACGACCGCGATGTAGATAGAGATAGAACTGCACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTAGCGCTCCGATTAAAAGTGGCTGTGTTAGTTATATACTTCTTGTCTCATTCTTGTTTACTGAGGATGCTGTATGGTGTGGTCTTATTGATACGCTTTGTTGTTTGGACAACGTTGATATTAAGAAAGAAGATCAGATTGAGACTAGGTCGTCTGGGAGGGCGAATCAAGATGCAAGAGGACATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATTATGTGGCTCCAGTAGGAAATCAAGGCTGGTCTGCACCTGAGCTGCCAAATTTCCCTTCTGTGGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATTGCTCCACTCTTAGTTCTGACAGTTCTCCCATGCATAGCCCAACAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGACCTACATCTCCATTGCACACCAAGATTTCCCATGAAACACATGCTGGACGTCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCTCCTAGTCCTGGAGGGCCAATGCCTTCAGCATCAATCCCAACAATGCCTTCAGCATCAACCTCTATGCCTCTACCATCAACCCCTGTGCCTTCACCATCAATTCCAATGCCTTCAGCATCATCCTCAATGGCTCTACCATCAACCCCAATGGCTTCACCATCATCCCCAATTACACAAGCAAACACTAAAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATCGGCCGGGGCACATTCGGAAGTGTGTATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCAAAGTCAGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTATTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTACGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTCGGCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTCGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTGTCCGTGATGCAGAAAGATAACACCCCTGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATCGAAATGTTCACTGGAAAACCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGAGAGAAACCCCGCCAATGCCTGAATCATTATCATACGAAGGCAGAGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACGGCTGCAATGCTGCTTGAACATCCGTTCATGAAAAACTTGCAGCATCCAGATACTTCATCTTGCTCTCCGGCTGTTACTGGAGCAAGTTTGATGGATAAATGCTATAGCCTAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTCCAAGGGAAAGTTAGCGGCCGAGAGGCAAGAGTTGCTTTTTCCCTTGCTCTCCAGTTCTCATTTTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAAGCTCTTCCAATACTGTCTCCTCCGCGCTCAGTTCCCAATGTGCATCATCTCGGTTCCCCTACAAATGCGGTCGGCGTTGTAAATCAAACCAATAAGAAGAACCATACACTAATATTATAG | 2520 | 46.47 | MRWLRNISFTPSSMVRISGTGTGGESPTRRTATRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERAATALSKWSDTTPEPISLSRSSSTSDDHAVPLPLPEVSPIFQRREGISNSNSAGENGDCPLPSPKGWRGRGGDDRDVDRDRTAPPHKIGGAASPSAPIKSGCVSYILLVSFLFTEDAVWCGLIDTLCCLDNVDIKKEDQIETRSSGRANQDARGHPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHYVAPVGNQGWSAPELPNFPSVAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSDSSPMHSPTGRSPHRDPRSPTGPTSPLHTKISHETHAGRREGSGHVSVHPLPLPPSPGGPMPSASIPTMPSASTSMPLPSTPVPSPSIPMPSASSSMALPSTPMASPSSPITQANTKTESISMKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNTPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRETPPMPESLSYEGRDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDTSSCSPAVTGASLMDKCYSLSKQYSSKFDQSSMLPSSQNSKGKLAAERQELLFPLLSSSHFVIGPLSHHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNAVGVVNQTNKKNHTLIL | 839 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8231330 | 8236258 | - | Lsi01G009970.1 | Lsi01g00997 | 653655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 64 | 161 | - | - | |
Lsi01g00997 | 839 | Gene3D | Transferase(Phosphotransferase) domain 1 | 441 | 736 | - | - | |
Lsi01g00997 | 839 | SMART | serkin_6 | 445 | 706 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 14 | 30 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 72 | 95 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 368 | 382 | - | - | |
Lsi01g00997 | 839 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 807 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 135 | 152 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 110 | 124 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 14 | 38 | - | - | |
Lsi01g00997 | 839 | ProSitePatterns | Protein kinases ATP-binding region signature. | 451 | 474 | IPR017441 | GO:0005524 | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 206 | 255 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 408 | 440 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 239 | 255 | - | - | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 317 | 440 | - | - | |
Lsi01g00997 | 839 | Pfam | Protein kinase domain | 446 | 706 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00997 | 839 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 | 1 | 807 | - | - | |
Lsi01g00997 | 839 | SUPERFAMILY | Protein kinase-like (PK-like) | 427 | 748 | IPR011009 | - | |
Lsi01g00997 | 839 | ProSiteProfiles | Protein kinase domain profile. | 445 | 706 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi01g00997 | 839 | MobiDBLite | consensus disorder prediction | 206 | 221 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00997 | Lsi-Chr1:8231330 | Lsi05g01214 | Lsi-Chr5:20005153 | 2.92E-105 | dispersed | |
Lsi10g01097 | Lsi-Chr10:15228376 | Lsi01g00997 | Lsi-Chr1:8231330 | 2.54E-14 | dispersed | |
Lsi03g01161 | Lsi-Chr3:21951256 | Lsi01g00997 | Lsi-Chr1:8231330 | 2.04E-34 | transposed | |
Lsi04g00019 | Lsi-Chr4:255555 | Lsi01g00997 | Lsi-Chr1:8231330 | 9.08E-12 | transposed | |
Lsi09g00980 | Lsi-Chr9:13093744 | Lsi01g00997 | Lsi-Chr1:8231330 | 2.41E-35 | transposed | |
Lsi01g00997 | Lsi-Chr1:8231330 | Lsi08g01440 | Lsi-Chr8:22594837 | 2.34E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83273 | PF00069 | Pkinase | 2.80E-68 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi01g00997 | - | - | cmo:103484760 | 1299.65 |