Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01041 ATGAATGTTACGATTATGGAAGTGGTTCCTTTGTCGGATGTTCAGTATGTTGAAGAAGACGACTCTGATTCTGCAAAGATTTCTGGAACTGCTTTGTTCTATGACGGACAATCTAACAACTGCATCGATCGTCAACAACAACAACCACAACAACAAGCGCCGATGGCAAATGGTGGACTCAATGACTTATCGGTAAATGTGGGGGACGCCCAAATTAACACTAAGTGTGATTTTCAAGGGTCTCCTGATTTTTTGCCTGCTTCGGGGCACTGTAGTTCGGATTCATATTCTAATTATCTCATGGATGCCCAAAAAGCATCTTGTGCTTCCCCTGACTCTGAATTTGATGATGCCAACACCGATAATTACTCCACAGAATCCTGTTTAGCATCTGAAAACTCTCGTATAGTTGTTGATACCATTGAAGATGAATTGCCTACCAACACCAGGCCAGAGGAGTTGTCTGTTTCAGGGCCACAGCCAATGTGGTTGGAAGGGGATGAATCTGTGGCGCTTTGGGTGAAGTGGAGGGGGAAGTGGCAGGCAGGAATTAGATGTGCAAGGGCTGACTGGCCATTATCTACTCTGAAAGCCAAACCTACACATGACAGGAAGAAGTATTTTGTGGTGTTTTTTCCACACACAAGGAACTATTCCTGGGCAGATGCGTTGCTTGTTCGTTCTATTGAGGACTTTCCTCAGCCTATTGCTTACAAGAGCCACAAAGCTGGTTTAAAATTAGTTGAAGATGTAAAAGTTGCAAGGAGATTTATAATGAAAAAACTTTCTGTTGGCATGCTGAATATCATAGACCAATTTCACCTTGAGGCTCTGATAGAGAGTGCACGTGATGTAATGACTTGGAAAGAGTTTGCCATGGAAGCTTCACGCTGTAATGGTTATTCTGATCTTGGTAGAATGCTCATGAAGCTGCAGAATATGATAGTGCAGTGCTTCATAAATTCAGATTGGCTTCAAAATTCTTTGCATTCTTGGGTACAACGATGTCAAAATGCTCAAACTGCAGAAATTATTGAAATGCTCAAGGAGGAATTGGCTGATGCTATTTTGTGGGACAAAGTGAAGTCTCACGGTGATGCACCAGTGCAGCCTACTTTTAGTTCTGTGTGGAAAACCTGGAAGCATGAAGTTACAAAATGGTTTTCAATATCTCCCACCCTTCCAATTACGAGAGACAAAGAGCAGCAGACTGTTGAAGCTTTCTTAGCTACAGCTCTCCAAGTTAGCAGGAAGAGACCCAAGCTTGAAATTCGTCGTGCGGAGGCACATTCTTCACTGGTGGAATCAAAGTGCTCAGAGCAAGCTATGGCTCTTGATATTGATTCTGGTTTTTTCAATAAACGAAACAGTTTAAATGCTAAATTAGCATCTGAATCTCACAAAGGTGAGGCAAGGGAGATTGTTACATCAGCAGGCTCACTCAGTACTGTACCTGGCAGGTTGACTGGGATCGTAGTTCAAACTGGAAATTTGGATCTAGCCTCTTGCAAGGATGTGGAACTGATCCCTCGACCTGAAGTAGTTGCAGAAAAATCCTTAACTTATGGTAATAAGAACAGACAGTGCATAGCTTTTATTGAATCCAAGGGAAGGCAGTGTGTTAGGTGGGCTAATGAGGGTGATGTTTACTGTTGTGTACATTTGTCCTCTCGTTTCACTGGCAACTCTGATAAGAAAGAACAGACTCGTTCTGTTGAATCGCCAATGTGCCAAGGTACTACTGTTCTTGGAAGTAGGTGCAAACATCGATCCCTGTTTGGCTCCTCATTCTGTAAGAAGCACAGACCAAGGAGTGAAACAAAAACGGAGTCCACTTCCCTTGGAAATAAGCTTACTGAGAAGCAACAGGACATTTATAGTGTAGAAGACACCAGTAATAAAGAAAATCCCCTTGGAGTGGATGAGGGTGATGTGACCAATAATGGAAATAGCTCATCTGACAAGCTTGAACATCATGGAAAAGATTCTATTGCCTCAAATCTTCGACATTGTATTGGGTCTTGTGAACATATTGACAGTAATCCATGTCTAGAAAGCCCAAAGCGTCATTACCTATATTGTGAAAAACACCTACCTAGCTGGCTTAAACGTGCGAGAAATGGTAAGAGTAGAGTAATATCGAAGGAAGTATTCATGGATCTTTTAAGAGACTGTAACTCACAAGAGCCAAAAATACATTTGCATCAAGCCTGTGAGCTATTTTACAGGCTTTTTAAAAGTATTTTATCACTGAGGAATCCAGTTCCTATGGAGGTTCAATTTCAGTGGGCACTTTCTGAAGCTTCTAAAAATTTGGGAGTTGGAGAACAATTTTTGAAATTGGTTTGTCGTGAAAAGGAAAGATTAAAAAGGATATGGGGATTCGATGCTGAAGACGCACAACTTTCCTCACCTTCAATGGATGTGGCAACTTCAGGGCCATTATTAACTTCAGGTAATTGCGGTGATGATACGAGTATCAGATGCAAAATTTGCTCAGAAGAATTTCTTGATGATCAAGCACTCAGTACTCACTTCATGGATGGTCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATCTGCCTAGATTCGTTCACCAATAAGAAAGTTTTAGAAACTCATGTGCAGGAGAGACACCATGCACCATTTGTTGAGCAATGCATGCTTCTGCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACTGAACAATTATGGTTACATGTAGTTGCTGTTCATCCGGTTGACTTTAGACTGTCAAATTCTAGTAGGCAGCAGAATTCTTCTTCTGGTGAGGATTCCCCAGTCAAACCCAAGCAGTGTAATATAGTTTCTAAGGCAAATGACAACCACAACAAGAATGTAGGAGGTTTACGAAAGTTTAATTGTAGGTTCTGTGGTTTGAAGTTTGATTTACTGCCTGATCTCGGCCGCCACCATCAAGCTGCACATATGGGGCCAGGTTTAGTTAACTCTCGACCTGCAAAGAGGGGATTTCATTATTATGCTTATAAATCAAAATCTGGGAAACTTGGTCATCCTAGATTTAAGAAGACTAAGGCAGGTGTGTCAAATAGGATCAGAAACAGAACAAAAGCTAGCATGAAAAAACATATTCAAGCTTCAAAGTTACTAAGCACAGGAAGTATAAATCTTCAACCTCATGTGTCCCAGTTAGCAAGTTCTCGTAAATTGACCCAAGGTTCAACTGTTGCGAAGGCATTGGTTTCTGAGATTCAGAAAAGAAAACTATCGCCTACCAATATTGACATTTTGTCTATTGCTCACTCTGCCTGTTGCAAGGTCAATTTTAAAGTCCTTCTGGAACAGAAGTTTGGAGTATTACCTGAATATTTTTATCTTAAGGCAACTGAATTATGCAGGGAAAAAGGTGAAGTTAACTGGTATATCAAGGGATTTGTTTGTCCTAAAGGATGTGAGGCATTTGAGGATCCTCTTTTGCTTCCCCATTTGATGCCTCATCCAAATGGTTTTGGAGACAACGAGAATGCACGCACTCCTGATCCTGTGAGTAGCAAATGGAAAGCTCGTGGATGCAGTTATGTCAGTGGTTCTCAGCTTTCAAGTCAGCAGTTTAGGGAAAAGGCTGTTGTTTTGTGTGAAGATATAAGCTTTGGCCAGGAATTAGTTGCTGTGGTCTGTGTAGCTGATGAAGGCCAAAGGAACCCACATCACATGTCTCTAGCCAACTCTGATGGTCAAAATGTTGGATACTCCGTGCCTTGGGAGAATTTTGCATACATTAAGAAACCATTGCTTGATAAATCCCTCGCCATTCATACAGAGAGTTTGCAGTTCGGATGTGCCTGCCCTCATTCACTCTGTTCTTCTGAAACATGTGATCATGTATACCTCTTCAATAGTGATTATGAAGACCCAAAAGACATTTATGGGAATCCCATGCGTCGCAGGTTCCCATATGATGAGAATGGTCGAATTATTTTGGAGGAAGGTTACCTTGTCTATGAGTGTAATGAAAGGTGCAGCTGTAGTAGAACCTGTCCAAATAGAGTGTTGCAAAATGGAGTTCAAGAATGGGCAGTGAGGGCTGGTGAAGCAATCCTGCGTGGTACATTTGTTTGCGAGTATGTTGGGGAGGTGTTGGATGAGCAGGAAGCAAACAGGAGACGTGACAGGTATAATAATGAAGGCAACTGCTATTTCTTGGATGTGGATGCTCATATTAATGACATTAGCAGATTAGTTGAAGGATCAGCTAGATATATTATTGATGCCACAAATTATGGAAATGTTTCGAGATTCATAAATCACAGACATTTGGTAATTTTAGCACGTACTTCTGAATCTTTTGTGACCATTTTAAGACCAACCAATTTGCGGGCAACAAATTTATTCTATGCCCGGGGATCATTTCTTTTGAATTTCCAGAAAGCTGCTAATCATTTTGAGGGAGTTAATGTTGTAACGTGTATTTTTCAAGAGATGTACAAATCTACTTTATTACAATTGAATTTCTTCATTGGATGCAGTTGCTCTCCGAATCTTGTAACTTACCAAGTCCTCGTGGAAAGCATGGAATATCATCGCTCACACATTGGATTGTATGCAAACCGGGATATAGCTACGGGTGAAGAGCTGACATTCAATTATCGACGCGAGCTACTGCCCGGAGGAAATGGCTGTGAATCTTCAAGTTGCTGA 4698 41.34 MNVTIMEVVPLSDVQYVEEDDSDSAKISGTALFYDGQSNNCIDRQQQQPQQQAPMANGGLNDLSVNVGDAQINTKCDFQGSPDFLPASGHCSSDSYSNYLMDAQKASCASPDSEFDDANTDNYSTESCLASENSRIVVDTIEDELPTNTRPEELSVSGPQPMWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVVFFPHTRNYSWADALLVRSIEDFPQPIAYKSHKAGLKLVEDVKVARRFIMKKLSVGMLNIIDQFHLEALIESARDVMTWKEFAMEASRCNGYSDLGRMLMKLQNMIVQCFINSDWLQNSLHSWVQRCQNAQTAEIIEMLKEELADAILWDKVKSHGDAPVQPTFSSVWKTWKHEVTKWFSISPTLPITRDKEQQTVEAFLATALQVSRKRPKLEIRRAEAHSSLVESKCSEQAMALDIDSGFFNKRNSLNAKLASESHKGEAREIVTSAGSLSTVPGRLTGIVVQTGNLDLASCKDVELIPRPEVVAEKSLTYGNKNRQCIAFIESKGRQCVRWANEGDVYCCVHLSSRFTGNSDKKEQTRSVESPMCQGTTVLGSRCKHRSLFGSSFCKKHRPRSETKTESTSLGNKLTEKQQDIYSVEDTSNKENPLGVDEGDVTNNGNSSSDKLEHHGKDSIASNLRHCIGSCEHIDSNPCLESPKRHYLYCEKHLPSWLKRARNGKSRVISKEVFMDLLRDCNSQEPKIHLHQACELFYRLFKSILSLRNPVPMEVQFQWALSEASKNLGVGEQFLKLVCREKERLKRIWGFDAEDAQLSSPSMDVATSGPLLTSGNCGDDTSIRCKICSEEFLDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHAPFVEQCMLLQCIPCGSHFGNTEQLWLHVVAVHPVDFRLSNSSRQQNSSSGEDSPVKPKQCNIVSKANDNHNKNVGGLRKFNCRFCGLKFDLLPDLGRHHQAAHMGPGLVNSRPAKRGFHYYAYKSKSGKLGHPRFKKTKAGVSNRIRNRTKASMKKHIQASKLLSTGSINLQPHVSQLASSRKLTQGSTVAKALVSEIQKRKLSPTNIDILSIAHSACCKVNFKVLLEQKFGVLPEYFYLKATELCREKGEVNWYIKGFVCPKGCEAFEDPLLLPHLMPHPNGFGDNENARTPDPVSSKWKARGCSYVSGSQLSSQQFREKAVVLCEDISFGQELVAVVCVADEGQRNPHHMSLANSDGQNVGYSVPWENFAYIKKPLLDKSLAIHTESLQFGCACPHSLCSSETCDHVYLFNSDYEDPKDIYGNPMRRRFPYDENGRIILEEGYLVYECNERCSCSRTCPNRVLQNGVQEWAVRAGEAILRGTFVCEYVGEVLDEQEANRRRDRYNNEGNCYFLDVDAHINDISRLVEGSARYIIDATNYGNVSRFINHRHLVILARTSESFVTILRPTNLRATNLFYARGSFLLNFQKAANHFEGVNVVTCIFQEMYKSTLLQLNFFIGCSCSPNLVTYQVLVESMEYHRSHIGLYANRDIATGEELTFNYRRELLPGGNGCESSSC 1565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8596435 8610677 + Lsi01G010410.1 Lsi01g01041 653699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01041 1565 SUPERFAMILY SET domain 1505 1553 IPR046341 -
Lsi01g01041 1565 SMART set_7 1346 1556 IPR001214 GO:0005515
Lsi01g01041 1565 ProSiteProfiles Pre-SET domain profile. 1278 1354 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lsi01g01041 1565 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1505 1565 - -
Lsi01g01041 1565 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1505 1565 - -
Lsi01g01041 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 968 989 IPR013087 -
Lsi01g01041 1565 Pfam Zinc finger C2H2-type, 3 repeats 863 990 IPR040689 -
Lsi01g01041 1565 Gene3D Classic Zinc Finger 817 887 - -
Lsi01g01041 1565 Pfam Pre-SET motif 1247 1349 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lsi01g01041 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 861 884 IPR013087 -
Lsi01g01041 1565 SMART preset_2 1212 1341 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lsi01g01041 1565 Pfam SET domain 1358 1549 IPR001214 GO:0005515
Lsi01g01041 1565 MobiDBLite consensus disorder prediction 604 659 - -
Lsi01g01041 1565 SUPERFAMILY SET domain 1204 1436 IPR046341 -
Lsi01g01041 1565 SMART c2h2final6 861 884 IPR013087 -
Lsi01g01041 1565 SMART c2h2final6 827 850 IPR013087 -
Lsi01g01041 1565 SMART c2h2final6 966 989 IPR013087 -
Lsi01g01041 1565 SMART c2h2final6 895 918 IPR013087 -
Lsi01g01041 1565 Gene3D SET domain 1193 1444 IPR046341 -
Lsi01g01041 1565 Gene3D SET domain 1493 1553 IPR046341 -
Lsi01g01041 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 966 994 IPR013087 -
Lsi01g01041 1565 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 1437 - -
Lsi01g01041 1565 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 1437 - -
Lsi01g01041 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 829 850 IPR013087 -
Lsi01g01041 1565 ProSiteProfiles SET domain profile. 1338 1550 IPR001214 GO:0005515
Lsi01g01041 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 897 918 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01041 - - - csv:101223040 2610.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01041 Lsi-Chr1:8596435 Lsi07g01256 Lsi-Chr7:18365168 5.54E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24651 PF00856 SET 3.80E-12 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01041 Lsi_Chr01 FPKM 0.0 0.067824 0.146312 0.0 0.0 0.0 0.0 0.0 0.0 0.086735