Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01042 ATGGCTGAAATAAGGTTAGCTAGATTAGAACAAGGCCAAACCAAGATTAAAAATGTGCCAATTGCTGTAACCCCAGAAGGTTTTTGGTGCTGCCCTTCTCCTGTTGTTTTCCAAAAGACTCTCAAAAGTCAAAACCCTCTAAACAAACCCAAACCTGCCTCCCCGCCCTCAAAGATCCCTGTTGAGAAGAAACCGACCCCAGTGACTGATAGAAAGCCAGCACTTTCGAGATCGCGGTCAGCTGCTGTTTCTGATGATGACCGAAAAGGAAATGCTGATACTTCTGGTTCTGGCTATAGTGCCCCAGAGGTTGTACACAGGGCATCACGGCCTAAGGTTGAAAATATGCCAAGGAAAATAGCAATTGAGTTTGGTGAGCCAGGGACAAGCAATATAAAGGTTGTTTTACTTGGGAAGCAAGGATTCTCAGTGAAGTTGAGTGTTCATAGAAACGTTTTGATGGATAATAGTACTTTTTTTGCCAATAAACTTTCTGATCAAGAAGGTCCCTCTATGGAAATTGGTGATTGTGAAGATGTTGAAATATATGTCGAAACTGTGGGACTGATGTACTGCAAAGAAATGAAGCAATGGCTGATGAAGCAAAATGTTTCTCGTGTTCTGCGAATTCTTAAGGTTGCTGAATTTCTCGGTTTTAAGTCATGCATGCAGTCATGTCTAGAATATTTGGAAGCAGCCCCTTGGGTTGGTGACGAAGAAGAAGAAAAGGTTGTCACGTCCATCCTCCGACTTCAAAGTGAAGGCATCGGGGTGAGCCCGGTATTGAAACGAGTGTCTGCAGATGTGTCTAAGCCTCATAAAGATACTCTTTCCCATATCATCGAACTTGTTCTCAGAAGCAATGAGGAGAGAGGCCGACGTGAAATGAAACTGGTAGTACTGAGGCTTCTTAGGGAGAACCAGAGTGTACCGAGCAATGCGAGTTCACCTGACATTTGCAATGAAATTATTTACTCTTCTTGTAGAAGCTGTTTGACGTCGCTATTGTTTCTGTTCCAGCAGGCTGCTGAAACAGATTTTACTGACAGGTCAGTGGACAGGAAAGAACCAGTGCTGAAGCAAATTACTCTAGAGGCTGATAATCTCTCGTGGTTGCTTGAGATATTAGCTGATAGGCAAGCGGCCGATGAGTTTGCAGTTATGTGGTCGAAGCATCAGGAACTAGCAGCCCTCCATGCGAAGTTGCCTATTGTATCTCGCTATCATATTAGCTGCATAACAGCTAGGTTATTTGTTGGCATTGGCAAGGGAGAGTTGTTACCAGCAAAAGATACCCGTAAATTGTTGTTACATACATGGTTAGAGCCATTGATCAATGATTATAGCTGGTTAAAACACGGTTGCGGGTCATTTGATCGAAAGGTCGTGGAAGAAGGAATTGGTCGGACGATTCTCACTCTCCCACTGGAGGATCAGCAAAGCATTTTGCTGACTTGGCTAGGGAGTTTTCTGAAGGTTGGGGATAGTTGCCCAAACCTCCAAAGAGCATTCGAGGTTTGGTGGCGTCGGACGTTTGTTCGACCTTACGTTGAGACACAAGGAAGCATTCACCAGCAAGATTGCTCGATCACAACCCAGCTGGAGCCTTGA 1611 44.51 MAEIRLARLEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKTLKSQNPLNKPKPASPPSKIPVEKKPTPVTDRKPALSRSRSAAVSDDDRKGNADTSGSGYSAPEVVHRASRPKVENMPRKIAIEFGEPGTSNIKVVLLGKQGFSVKLSVHRNVLMDNSTFFANKLSDQEGPSMEIGDCEDVEIYVETVGLMYCKEMKQWLMKQNVSRVLRILKVAEFLGFKSCMQSCLEYLEAAPWVGDEEEEKVVTSILRLQSEGIGVSPVLKRVSADVSKPHKDTLSHIIELVLRSNEERGRREMKLVVLRLLRENQSVPSNASSPDICNEIIYSSCRSCLTSLLFLFQQAAETDFTDRSVDRKEPVLKQITLEADNLSWLLEILADRQAADEFAVMWSKHQELAALHAKLPIVSRYHISCITARLFVGIGKGELLPAKDTRKLLLHTWLEPLINDYSWLKHGCGSFDRKVVEEGIGRTILTLPLEDQQSILLTWLGSFLKVGDSCPNLQRAFEVWWRRTFVRPYVETQGSIHQQDCSITTQLEP 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8619376 8622384 + Lsi01G010420.1 Lsi01g01042 653700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01042 536 MobiDBLite consensus disorder prediction 42 108 - -
Lsi01g01042 536 Gene3D Potassium Channel Kv1.1; Chain A 126 232 IPR011333 -
Lsi01g01042 536 PANTHER BTB/POZ DOMAIN PROTEIN 1 525 - -
Lsi01g01042 536 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 525 IPR038920 -
Lsi01g01042 536 SUPERFAMILY POZ domain 144 231 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01042 - - - bhj:120073152 1031.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01042 Lsi-Chr1:8619376 Lsi09g00234 Lsi-Chr9:2448711 7.23E-115 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01042 Lsi_Chr01 FPKM 0.0 0.0 0.0 0.220845 4.119927 5.16086 7.795103 8.418966 9.806532 9.433664