Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01043 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCCAGGAATCTTCACCTTCTCTAATGGCACCTTGGACAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGATAAGCTCCGACTCGACTCCTTCTCCGCCCCGATTCCCCCATCTACTGTGGCCGAAATAGACGAACATCATCACCATCACCACCACCACCACCAACAACAACAACTCCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCGTCGTCCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCCCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCGCAACCGCGATCCCCATCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACCCTCTCCAGGGTTTCGAAGGTGGGGTCGGTGTTGGAGATCAAACGGCTTTCGGACAATTCGCTGTCGTCGAAAGTCAAGGCCTTTCACTCTCACTTCACTCGTCCTCCTTACAACACTTGGAGGACGCTGCCGTCGCTGCTGCCGCGGTCGCGAAAGCGGATGAATTGAGAATTGGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCATGATGGAGGAGATGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTTCACAAATAATGAATCCTAACCATCAAGTTCAAATTGGATTTGGATCATCTTTAGGAGTTGTTAATGTGTTGAGGAATTCAAAATATGCCCAACCTGCACAAGAATTGCTTGAGGAGTTTTGTAGTGTTGGAAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCAATACCGAAACCACCGCCACCGCTACCGGTGGCTCAACATCAAAGGATCAACCTACCTTATCGGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGCAAATTCAAACAAAAAGTCTGTCAATTTTGGCTGTATTTGAAGAAGAAACAATGGCGAGAAACACTAAGGAGATTATGTACAACTTGTATAGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTGATGGGGTTCGGGGCAGCAGCACCGTACACGACGTTGACACAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATAGCCGAGCAGCTAAGGCAGAGCTACGAGGCGTTGGGGGAGAAAGGAGGGAATGGAGGATCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGATTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGCAAAGTCGATACAGGTCAATCACAAGACGACACCACACACAATAATAATAATATTAATAATAATAATAATAAAACCCAAAACAATCCCATAAATTCACAAAATCCAACATCCACCACTGCTCCACCACCACCTTCAGCCACCACCGTCGAAGAAGTAGCGACGGGGTTCACGGCGGCGCATGAGTACTCGGATCTTCATGATGTGTGGCGTCATGGAAGTAGTGGAGATCATCAACATTATGGAACCATGTCTGAGGATGTTCCAGCTGCGGCGGCTGACATGAATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTCACTTTAGGCCTCCGCCACGCCGGAAACACCTCCGCTGCTGCTGCCGCGGCGGCGGATAACCCTTCTTTCTCCCTAAGGGACTTTGGTCACTCTTGA 2172 47.88 MGIAKGPLILSNKATSCANSSMSHDYHHHHHPGIFTFSNGTLDKSNSSTLPQHIRPDKLRLDSFSAPIPPSTVAEIDEHHHHHHHHHQQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAVVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPRSPSPPSTSSTLHMLLPNPPANPLQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAVAAAAVAKADELRIGDGGILYNYNNNNNQVHDGGDGGSGSTSSILQYSFRNNENSPHSFQASQIMNPNHQVQIGFGSSLGVVNVLRNSKYAQPAQELLEEFCSVGKVQLKKNKFNIKPNPNTETTATATGGSTSKDQPTLSAADRIEHQRRKVKLLSMLDEQIQTKSLSILAVFEEETMARNTKEIMYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLRQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTGQSQDDTTHNNNNINNNNNKTQNNPINSQNPTSTTAPPPPSATTVEEVATGFTAAHEYSDLHDVWRHGSSGDHQHYGTMSEDVPAAAADMNPGPTLIRFGTTNTATGDVSLTLGLRHAGNTSAAAAAAADNPSFSLRDFGHS 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8628619 8634404 - Lsi01G010430.1 Lsi01g01043 653701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01043 723 Pfam Associated with HOX 304 454 IPR006563 -
Lsi01g01043 723 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 704 - -
Lsi01g01043 723 MobiDBLite consensus disorder prediction 145 159 - -
Lsi01g01043 723 MobiDBLite consensus disorder prediction 579 612 - -
Lsi01g01043 723 Pfam Homeobox KN domain 524 563 IPR008422 GO:0003677|GO:0006355
Lsi01g01043 723 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 83 704 - -
Lsi01g01043 723 MobiDBLite consensus disorder prediction 335 359 - -
Lsi01g01043 723 ProSiteProfiles 'Homeobox' domain profile. 504 567 IPR001356 GO:0003677
Lsi01g01043 723 MobiDBLite consensus disorder prediction 579 626 - -
Lsi01g01043 723 SMART prehox3 299 455 IPR006563 -
Lsi01g01043 723 Gene3D - 510 572 - -
Lsi01g01043 723 SUPERFAMILY Homeodomain-like 509 575 IPR009057 -
Lsi01g01043 723 SMART HOX_1 507 571 IPR001356 GO:0003677
Lsi01g01043 723 CDD homeodomain 507 568 IPR001356 GO:0003677
Lsi01g01043 723 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01043 Lsi-Chr1:8628619 Lsi10g00586 Lsi-Chr10:8505997 6.09E-106 dispersed
Lsi08g01577 Lsi-Chr8:23793283 Lsi01g01043 Lsi-Chr1:8628619 1.57E-33 dispersed
Lsi10g00585 Lsi-Chr10:8501633 Lsi01g01043 Lsi-Chr1:8628619 1.16E-11 dispersed
Lsi01g01043 Lsi-Chr1:8628619 Lsi03g01817 Lsi-Chr3:29661765 6.74E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24652 PF07526 POX 1.30E-40 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01043 - - bhj:120073177 1043.11