Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi01g01044 ATGGAGTGGACGACCAATATTGATATGACCTTAAGAAGTAATCATGGCAGAAATGGACATGAGAATATCTCACTTTTGCCCCTGTTTCTCAATCCAATTGATGGCAAATATGATCAAGAGGAAGTTGATTATGCTAAGGCATTATCACTCTCAGAAATGGAAGTTGAAAAGCAGCAAAGTTTGATCATTGGTAAGAAGAAACAGGAGATGGAAGCCATCAATGCCCAAATTGAAGAAGATGAGCAGCTTGCCAATGCAATGCAACTGAGCTTAGTCATGGAGTCTTCTCTTACAAATGACAGTCCACCTGCTTCTTCCTCTCGATCTTTTTCGGCCTCTGCGTCGAAGCTTATCTGTGCTGGATGCAACACCGAGATAAGCAGACGTGAACATATTTCGTGTTCAAATGGTATTGTTTGGCATGTAGAATGTCTCCTATGCCATACTTGCAAACAGCTAATCAAAGATAATGAGTTATACATGTCTGAAAATCGACCTTATCACACATCTTGTCTTAGGAATATGAGACTTCCTAATCCTAAATGCTATGTATGCGACAACTTTATCCCATATATTAATGGGGCGATTGAATTTGGAGAGCATCCTTTTTGGGCAAAAAAATACTGCCCTTCCCATGAAGATGATGGAACTTCCAGTTGTGTTAGCTGTGAAAGATTACAGCCAAATGGAATCAAGTACATTTTACTCAAAGATGGCAGAAGCTTGTGTCCAGAGTGTTCCAGCTTCAAGATTATGGACACCAATGAGTGTCAACCTCTTTTCCATGAGATACAAGAATTCTTCTCAAGTTTAAACATGAAACTGAACCAAAAGATTCCATTGGGATTGGTCGAAAGGGAAGCATTGAACAACGCCATGGAAGGGGAAAAGAATGGACATCACCATTTATCCGAAACGCGAGGGCTCTGCTTGTCAGAAGAGCAAACCATTCCCATTATTCATATGAGGAAACTTATTGGGAGACCTTCAATCCTGGACATACTCACACAGCAACGCAGACTTGTTAGTAACTGTGAAGTTAATGCTATACTCATTCTATATGGCCTCCCCAGGTTGTTAACAGGATCCATTCTAGCACATGAGATGATGCATGCTTGGCTAAGGCTTCAAGGTTATCCCAATCTAAAGCCAGAAATTGAAGAAGGTATCTGCCAAGTCCTAGCTCACATGTGGCTGAAATCCAAAATCAACGTGGGATCTGAAACTGCCATGGCTGCTGCAAGTTCATCTTCTTCCCTGCAACCTGCATGTTCAAACAAGCACAAGAAACTGAGTGAAATAGAAAAGAAACTTGGAGAATGTTTCATACGCCAAATCGAACTGGATGCTTCACCAGCCTATGGAGATGGGTTCAGGGTGGGAGAGCAGGCAGTTGCCCAGTATGGTTTGAAGGAAACTCTTGAACACATCAAAGTTACTCGGACCTTTCCAGTTTAA 1458 41.63 MEWTTNIDMTLRSNHGRNGHENISLLPLFLNPIDGKYDQEEVDYAKALSLSEMEVEKQQSLIIGKKKQEMEAINAQIEEDEQLANAMQLSLVMESSLTNDSPPASSSRSFSASASKLICAGCNTEISRREHISCSNGIVWHVECLLCHTCKQLIKDNELYMSENRPYHTSCLRNMRLPNPKCYVCDNFIPYINGAIEFGEHPFWAKKYCPSHEDDGTSSCVSCERLQPNGIKYILLKDGRSLCPECSSFKIMDTNECQPLFHEIQEFFSSLNMKLNQKIPLGLVEREALNNAMEGEKNGHHHLSETRGLCLSEEQTIPIIHMRKLIGRPSILDILTQQRRLVSNCEVNAILILYGLPRLLTGSILAHEMMHAWLRLQGYPNLKPEIEEGICQVLAHMWLKSKINVGSETAMAAASSSSSLQPACSNKHKKLSEIEKKLGECFIRQIELDASPAYGDGFRVGEQAVAQYGLKETLEHIKVTRTFPV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8655285 8660082 + Lsi01G010440.1 Lsi01g01044 653702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi01g01044 485 Coils Coil 63 83 - -
Lsi01g01044 485 PANTHER PROTEIN DA1-RELATED 2 43 485 IPR045218 -
Lsi01g01044 485 CDD LIM_DA1 119 171 - -
Lsi01g01044 485 PANTHER PROTEIN DA1-RELATED 1 43 485 - -
Lsi01g01044 485 Gene3D Cysteine Rich Protein 113 176 - -
Lsi01g01044 485 ProSitePatterns LIM zinc-binding domain signature. 119 154 IPR001781 -
Lsi01g01044 485 Pfam LIM domain 119 171 IPR001781 -
Lsi01g01044 485 Pfam Protein DA1 271 479 IPR022087 -
Lsi01g01044 485 ProSiteProfiles LIM domain profile. 117 178 IPR001781 -
Lsi01g01044 485 SMART lim_4 118 171 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi01g01044 - - - csv:101204053 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00915 Lsi-Chr4:9237570 Lsi01g01044 Lsi-Chr1:8655285 3.21E-126 transposed
Lsi10g00576 Lsi-Chr10:8390452 Lsi01g01044 Lsi-Chr1:8655285 8.62E-23 transposed
Lsi10g00577 Lsi-Chr10:8393201 Lsi01g01044 Lsi-Chr1:8655285 1.88E-113 transposed
Lsi11g01059 Lsi-Chr11:18368060 Lsi01g01044 Lsi-Chr1:8655285 3.53E-11 transposed
Lsi01g01044 Lsi-Chr1:8655285 Lsi08g01424 Lsi-Chr8:22473187 6.73E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010044 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 2 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24653 PF12315 DA1-like 3.70E-88 CL0126 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi01g01044 Lsi_Chr01 FPKM 7.196643 9.46578 4.311382 4.108772 11.110255 6.949374 9.109733 7.835351 6.233557 7.47428